Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq475178 190 2e-43 seq119187 118 1e-21 seq83457 98.7 1e-15 >seq475178 Length=5806 Score = 190 bits (210), Expect = 2e-43 Identities = 296/426 (69%), Gaps = 1/426 (0%) Strand=Plus/Plus Query 125089 CCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCG 125148 ||| |||| || ||| ||||| |||||| || || || |||||||||| || | ||| Sbjct 108 CCCCCCCGGCCCCCGCTCACCCACCCGCCGGGCGCCTCCAGCCACTCGCCCCGCCCCTCG 167 Query 125149 GCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCG 125208 |||||||| ||||||||||| ||||||| || || ||||| || | ||||| ||| Sbjct 168 GCCAGGTAGGCGGCCAGCGCGGCGGCCAGGCAGCGCGGCCCGTCGCCGCAGCCCCGCTCG 227 Query 125209 TACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTG 125268 |||||| | ||||||| |||| ||| ||| | |||||| || |||||||| Sbjct 228 GCCAGCGCGGCGGCCAGCGTGCCGGCGAAGACCACCAGCGCCAGCAGCCGGCCCCAGTTC 287 Query 125269 AAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGC 125328 | ||||| ||| | || | | | |||| | | |||| || | ||| || || Sbjct 288 AGGCCGCCGTCGGCCTCCAGCTGCGCCGCCACCCGCTCCAGCAGCGCCGCCGCCTCCCGC 347 Query 125329 GTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGC 125388 | || | | ||| | |||| |||||||||| |||||||||| ||| |||| | ||||| Sbjct 348 GGCTCGGCCCGCGCCAGCGGCCCGCAGGAGCGGAAGAAGGGCCGCTCCCGCCCCCCCAGC 407 Query 125389 TCGGCC-GCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCC 125447 |||||| ||||| ||||| | || | || ||| | | || ||| Sbjct 408 TCGGCCGGCCGCCCGCCGCAGCGTGGCCGCCGGGGGGCGGGGGGGCAGGGCGCCCCCGCC 467 Query 125448 GCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGC 125507 || || || ||||||||| |||||||||| || ||||| | |||| ||| ||| | | Sbjct 468 GCCGCGGTCCTGGAAGTAGTCCTCCAGCACCAGCGCCGCCCCCTCCTCCAGCGAGCCCGG 527 Query 125508 CATGGC 125513 |||||| Sbjct 528 CATGGC 533 Score = 178 bits (196), Expect = 1e-39 Identities = 293/426 (69%), Gaps = 1/426 (0%) Strand=Plus/Minus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| ||| |||| | ||||| || |||||||||| ||||||||| || Sbjct 533 GCCATGCCGGGCTCGCTGGAGGAGGGGGCGGCGCTGGTGCTGGAGGACTACTTCCAGGAC 474 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || ||||| || | | ||| || | || ||||||| ||||||||| || Sbjct 473 CGCGGCGGCGGGGGCGCCCTGCCCCCCCGCCCCCCGGCGGCCACGCTGCGGCGGGCGGCC 414 Query 157203 NNNNNNNNNGAGCGG-CGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGG 157261 | | || || ||| |||||||||| |||||||||| |||| | ||| | | Sbjct 413 GGCCGAGCTGGGGGGGCGGGAGCGGCCCTTCTTCCGCTCCTGCGGGCCGCTGGCGCGGGC 354 Query 157262 CGGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAG 157321 || ||| || ||| | || |||| | | |||| | | | || | ||| | Sbjct 353 CGAGCCGCGGGAGGCGGCGGCGCTGCTGGAGCGGGTGGCGGCGCAGCTGGAGGCCGACGG 294 Query 157322 CGGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGC 157381 |||| | |||||||| || |||||| | ||| ||| |||| ||||||| | || Sbjct 293 CGGCCTGAACTGGGGCCGGCTGCTGGCGCTGGTGGTCTTCGCCGGCACGCTGGCCGCCGC 234 Query 157382 GCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTA 157441 |||| ||| ||||| | || ||||| || || ||||||| ||||||||||| || Sbjct 233 GCTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGCTGCCTGGCCGCCGCGCTGGCCGCCTA 174 Query 157442 CCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACG 157501 ||||||||| | || |||||||||| || || || |||||| ||||| ||| || || Sbjct 173 CCTGGCCGAGGGGCGGGGCGAGTGGCTGGAGGCGCCCGGCGGGTGGGTGAGCGGGGGCCG 114 Query 157502 GGCGGG 157507 || ||| Sbjct 113 GGGGGG 108 >seq119187 Length=7122 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 157356 GTCCTCGGCGGCTCGCTGGCAACGGCGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGC 157415 ||| ||| |||| ||||||| | |||||| ||| ||||| | || ||||| || Sbjct 7012 GTCTTCGCCGGCACGCTGGCCGCCGCGCTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGC 6953 Query 157416 CGCTTGGCCGCAGCGCTGGCCGCGTACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAG 157475 || ||||||| ||||||||||| ||||||||||| |||| |||||||||| || || | Sbjct 6952 TGCCTGGCCGCCGCGCTGGCCGCCTACCTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCG 6893 Query 157476 CACGGCGGATGGGTAAGC 157493 |||||||||||||| ||| Sbjct 6892 CACGGCGGATGGGTGAGC 6875 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 125103 GCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGC 125162 ||| ||||||||||||||| || || |||||||||| |||| ||||||||||| ||||| Sbjct 6875 GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGGCCAGGTAGGCGGC 6934 Query 125163 CAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGC 125222 |||||| ||||||| || || ||||| || | ||||| ||| |||||| | || Sbjct 6935 CAGCGCGGCGGCCAGGCAGCGCGGCCCGTCGCCGCAGCCCCGCTCGGCCAGCGCGGCGGC 6994 Query 125223 CAGCGAGCCGCCGAGGAC 125240 ||||| |||| ||| ||| Sbjct 6995 CAGCGTGCCGGCGAAGAC 7012 >seq83457 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 125107 ACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGCCAGC 125166 ||||||||||||||| || || |||||||||| |||| |||||| |||| ||||||||| Sbjct 424 ACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGGCCCGGTAGGCGGCCAGC 365 Query 125167 GCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGCCAGC 125226 || ||||||| || || ||||| ||| | | ||| | |||| ||| |||||| Sbjct 364 GCCGCGGCCAGGCAGCCCGGCCCGTCCCCGCCGCCCCGCCCCGCCAGCCCCGCGGCCAGC 305 Query 125227 GAGCCGCCGAGGAC 125240 |||| ||| ||| Sbjct 304 CCGCCGGCGACGAC 291 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 157356 GTCCTCGGCGGCTCGCTGGCAACGGCGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGC 157415 ||| ||| |||| |||||| ||| |||| | ||| | | ||| ||||| || Sbjct 291 GTCGTCGCCGGCGGGCTGGCCGCGGGGCTGGCGGGGCGGGGCGGCGGGGACGGGCCGGGC 350 Query 157416 CGCTTGGCCGCAGCGCTGGCCGCGTACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAG 157475 || ||||||| ||||||||||| |||| |||||| |||| |||||||||| || || | Sbjct 351 TGCCTGGCCGCGGCGCTGGCCGCCTACCGGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCG 410 Query 157476 CACGGCGGATGGGT 157489 |||||||||||||| Sbjct 411 CACGGCGGATGGGT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505967109148800