Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq83088 253 1e-62 seq435555 190 1e-43 seq39562 95.1 8e-15 >seq83088 Length=6024 Score = 253 bits (280), Expect = 1e-62 Identities = 398/567 (70%), Gaps = 6/567 (1%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| || || |||||| || |||| | |||||| || | Sbjct 673 ATCAACTGCTCGGGGGTCGTTCGCGGGGACGAGAAAGCCATCCAGGAGGCCCAGCTCAGC 614 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACC 107642 |||||||| || ||| || || || | || | | | | ||| ||| | || Sbjct 613 AACCTGGAGGTTGCGAACAAAAGGGCGGCCCTGATGCCCGGCGAGGGCCTGAACCTGACG 554 Query 107643 AGAGACTGTGAGCGCTT-CA--AGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAA 107699 ||||| | | |||| || |||||| ||| |||||| |||| || ||||| | Sbjct 553 GAGGACTGCGGGAGCTTGCAGGAGGCCC---GGAGGTTCATTGAGTTGCCGCTGAGCCAG 497 Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 || ||| || |||||||| |||||||| ||||| |||| | || || || | || Sbjct 496 GAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGAGATGTTC 437 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || ||||| ||||| || | || ||||| |||||| | ||||| |||||||| || | Sbjct 436 GAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCGTCCACGTTGACGGC 377 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||| | | ||| | ||||| || |||||| | ||||||||||||||||| Sbjct 376 AAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGCTTCCCCAATGTC 317 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || |||| || ||| |||||| ||||||||||||||| | |||| || ||| Sbjct 316 TTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCGAC 257 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | ||| || | |||||| | ||||| ||| ||| || || || Sbjct 256 CTCAACTGCATGCAGGACCTGTTGCAGAGCCCCGTGCCGTGGCGCTACAACCTCAACACC 197 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 || || || || |||||||| ||||||||||| ||||| |||| ||||| ||| || || Sbjct 196 TGTGGCACCGATTTCCCCATCAAGACCAATGCTGAGATCGTCCGTGCCCTGAAGCTGCTG 137 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGAG 108086 |||| |||||| |||||||| ||| Sbjct 136 CAGGGGCGGAACAGCATGGAGTCAGAG 110 >seq435555 Length=6688 Score = 190 bits (210), Expect = 1e-43 Identities = 376/566 (66%), Gaps = 44/566 (8%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| || || |||||| || |||| | |||||| || | Sbjct 1135 ATCAACTGCTCGGGGGTCGTTCGCGGGGACGAGAAAGCCATCCAGGAGGCCCAGCTCAGC 1076 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACC 107642 |||||||| || ||| || || || | || | | | | ||||| ||||| || Sbjct 1075 AACCTGGAGGTTGCGAACAAAAGGGCGGCCCTGATGCCCGGCGAGTACCTGAACATGACG 1016 Query 107643 AGAGACTGTGAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAA 107699 | ||||| | ||||||||| ||| ||| |||||| ||||||| ||||| | Sbjct 1015 AAGGACTGCGGCAGCTTCAAGGAGGCCC---GGAGGTTCATTGAGTTCCCGCTGAGCCAG 959 Query 107700 GAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTT 107759 || ||| || |||||||| |||||||| ||||| |||| | || || || | || Sbjct 958 GAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGAGATGTTC 899 Query 107760 GAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG 107819 || ||||| ||||| || | || ||||| |||||| | ||||| |||||||| || | Sbjct 898 GAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCGTCCACGTTGACGGC 839 Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 |||||||| |||||||||||||| Sbjct 838 AAGTCCCC--------------------------------------GCTTCCCCAATGTC 817 Query 107880 TTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGAC 107939 || |||| || ||| |||||| ||||||||||||||| | |||| || ||| Sbjct 816 TTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCCGAC 757 Query 107940 CTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACA 107999 || ||||| ||| | ||| || | | |||| | ||||| ||| ||| | || || || Sbjct 756 CTCAACTGCATGCAGGACCTGTTGCCGAGCCCCGTGCCGTGGCGCTACATCCTCAACACC 697 Query 108000 TGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTG 108059 || || | || |||||||| ||||||||||| ||||| |||| ||||| ||||| || Sbjct 696 TGTGGCCCCGATTTCCCCATCAAGACCAATGCTGAGATCGTCCGTGCCCTGCAGATGCTG 637 Query 108060 AAGGGTAAGAACAGTATGGAGTCTGA 108085 |||| |||| | |||||||| || Sbjct 636 CAGGGGCGGAACCGCATGGAGTCCGA 611 Score = 163 bits (180), Expect = 2e-35 Identities = 253/361 (70%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||| |||||||| ||||| ||||| ||| |||||||||||| | || Sbjct 530 GAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCAT------GCC 477 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 | | | |||| ||| | | || | ||||| || |||||||||||| ||| Sbjct 476 CGGCG--TGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCAGACATGAACGCC 419 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || | || |||||||||||||||| ||||| || ||||| ||| ||||| || Sbjct 418 CTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTAC 359 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | ||||| | || || | | | || ||||| | |||||||| || ||| || | Sbjct 358 CCGCCCTGTACCGGCCAGCACCAGCGCGCTGTCTGCGTCTACGGGGCGGGCGACGTGCCC 299 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 ||||| |||||| | || ||||||||||| |||||||| ||||| |||||| || | Sbjct 298 TGGATGCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGACGCC 239 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGA 108635 | | | ||||| | || ||| |||| || || | |||| |||| || | | ||| ||| Sbjct 238 GCCATCCAGTGTCTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGGCAGGGGACTCTGA 179 Query 108636 G 108636 | Sbjct 178 G 178 >seq39562 Length=8284 Score = 95.1 bits (104), Expect = 8e-15 Identities = 196/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 4188 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 4247 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||| || || | ||||| || | || |||||| Sbjct 4248 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAG---AAGTACGACGTTTCTGACATG 4303 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || || || Sbjct 4304 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCA 4363 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | || | | |||| |||| |||| || ||| Sbjct 4364 CCCTACCCACCATGCAATGGAGTTCACGTTCGCTCTGTCTGTATTTTTGGGGTAGGAGAC 4423 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || || |||||| Sbjct 4424 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAATTTGAC 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346123535913606