Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq109713 118 1e-21 seq50110 102 8e-17 >seq109713 Length=16520 Score = 118 bits (130), Expect = 1e-21 Identities = 109/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || |||||||| ||||| || | ||| ||||| ||||||| ||| | Sbjct 3688 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3629 Query 13742 ttAACC-AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 | | || |||| |||| || || || || |||||||| ||||| || ||||| ||||| Sbjct 3628 TCAGCCAAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAG 3569 Query 13801 GCTATTAGTCGTTCTCC 13817 |||| || |||||||| Sbjct 3568 GCTACTACGCGTTCTCC 3552 >seq50110 Length=15533 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| |||||||| || || || || || | || ||||||| |||| || | Sbjct 3963 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCTCTCTTCT 4022 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 4023 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 4082 Query 13802 C 13802 | Sbjct 4083 C 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475565201591160