Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq354460 729 0.0 seq291134 412 1e-110 seq237293 224 4e-54 seq243231 96.9 1e-15 >seq354460 Length=442 Score = 729 bits (808), Expect = 0.0 Identities = 427/442 (97%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 4837 CCTGGGCCATGTAAGCCGATTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAAT 4896 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 442 CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAAT 383 Query 4897 CCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTTACCGTCACTGCATAAACCATCGG 4956 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 382 CCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGG 323 Query 4957 GAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTAA 5016 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 322 GAGAGCAAGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCA 263 Query 5017 CGCCGGAAGTGAACTCAAAGAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCA 5076 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 262 CGCCGGAAGTGAATTCAAACAGGGTTCTGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCA 203 Query 5077 GAGCCTTAGCGTTAACTTCCGGAGCCACACCGGTGCAAACCTCAGCAAGCAGGGTGTGGA 5136 | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 202 GTGCTTTAGCGTTAACTTCCGGAGCCACCCCGGTGCAAACCTCAGCAAGCAGGGTGTGGA 143 Query 5137 AGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCGGGGCTTTGCTATCACGTTGT 5196 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 142 AGTAGGACATTTTCATGTCAGGCCACTTCTTTCCGGAGCGGGGTTTTGCTATCACGTTGT 83 Query 5197 GAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTGCCATGCATCATCCCCCTGTT 5256 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 82 GAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTGCCACGCATCATCCCCCTGTT 23 Query 5257 CGACAGCTCTCACATCGATCCC 5278 |||||||||||||||||||||| Sbjct 22 CGACAGCTCTCACATCGATCCC 1 >seq291134 Length=410 Score = 412 bits (456), Expect = 1e-110 Identities = 339/410 (83%), Gaps = 2/410 (0%) Strand=Plus/Plus Query 42214 GGCTGCGGGCAGAGATGCAGGGGGAGATTGTGGCACTGGTCCACAGTCATCCCGGTGGAC 42273 |||||| |||||| | |||||| ||||||||||| ||||||||||| || |||||||| | Sbjct 1 GGCTGCAGGCAGAAAGGCAGGGTGAGATTGTGGCGCTGGTCCACAGCCACCCCGGTGGTC 60 Query 42274 TGCCCTGGCTGAGCGAGGCTGACCGGCGGCTGCAGATAAAAAGCGCACTGCCCTGGTGGC 42333 ||||||||||||| ||||| ||||||||||||||| | | || | |||| ||||||| Sbjct 61 TGCCCTGGCTGAGTGAGGCCGACCGGCGGCTGCAGGTGCAGAGTGATTTGCCGTGGTGGC 120 Query 42334 TGGTCTGCCGGGGTGAC-ATTCACAAATTCCGCTGTGTGCCACATCTGACAGGACGGCGC 42392 ||||||||||||| ||| ||||| || |||||||||||||| ||||| || || |||||| Sbjct 121 TGGTCTGCCGGGG-GACGATTCATAAGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGC 179 Query 42393 TTTGAGCACGGGGTGACGGACTGTTACACGCTGTTCCGGGATGCATACCATCTGGCGGGA 42452 ||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 180 TTTGAGCACGGTGTGACGGACTGTTACACACTGTTCCGGGATGCTTATCATCTGGCGGGG 239 Query 42453 ATTGATATGCCGGATTTTGAGCGTGAGGATGACTGGTGGCGCAACGGTCAGAACCTTTAC 42512 ||||| |||||||| ||| | || ||||||||||||||||| ||||| ||||| || | Sbjct 240 ATTGAGATGCCGGACTTTCATCGGGAGGATGACTGGTGGCGTAACGGCCAGAATCTCCAT 299 Query 42513 CTGGACAATATGGCGGTCACCGGCTTTTACCGGGTGCCCCTGTCCTCTGCACAGGCGGGC 42572 |||| ||| ||| || || || | || | |||||| |||| | |||||| ||||| Sbjct 300 ATGGATAATCTGGAGGCGACGGGGCTGTATCAGGTGCCGTTGTCAGCGGCACAGCCGGGC 359 Query 42573 GATATCCTGCTGTGCTGCTTTGGCGCATCGGTGGCCAATCATGCCGCCAT 42622 ||| | ||||||||||| ||||| |||| ||| | ||||| ||||| || Sbjct 360 GATGTGCTGCTGTGCTGTTTTGGTTCATCAGTGCCGAATCACGCCGCAAT 409 >seq237293 Length=409 Score = 224 bits (248), Expect = 4e-54 Identities = 129/132 (98%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 13581 GAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGGCGGTATATGGAGTTAAAAGATGA 13640 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 409 GAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGGAGGTATATGGAGTTAAAAGATGA 350 Query 13641 CCATCTACATCACTGAGCTAATGACAGGCCTGCTGGTAATCGCAGGCCTTTTTATTTGGG 13700 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 349 CCATCTACATTACTGAGCTAATAACAGGCCTGCTGGTAATCGCAGGCCTTTTTATTTGGG 290 Query 13701 GGAGAGGGAAGT 13712 |||||||||||| Sbjct 289 GGAGAGGGAAGT 278 >seq243231 Length=365 Score = 96.9 bits (106), Expect = 1e-15 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 18310 ACAGTCAGAAAATACATTGGCGATAAAGAAGGGAAAAAGCACGCCGTCGTCAATGGCGTC 18369 || |||||||||||| ||| |||||||| ||||||| ||||||| ||||||| | ||| Sbjct 6 ACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGTCAACGACGTT 65 Query 18370 CTTATGGTTCATCGCGGATGG-GGTAAAGA 18398 || || ||||||||||||||| || ||||| Sbjct 66 CTCATCGTTCATCGCGGATGGAGGGAAAGA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184142530763576