Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq375765 691 0.0 seq243231 605 7e-169 seq237293 347 3e-91 >seq375765 Length=403 Score = 691 bits (766), Expect = 0.0 Identities = 395/403 (98%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 36540 GTTTGCAATGGCGTACCTTCGCGGCAGATATAATGGCGGTGCGTTTACAAAAACAGTAAT 36599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 GTTTGCAATGGCGTACCTTCGCGGCAGATATAATGGCGGTGCGTTTACAAAAACAGTAAT 344 Query 36600 CGACGCAACGATGTGCGCCATTATCGCCTGGTTCATTCGTGACCTTCTCGACTTCGCCGG 36659 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 343 CGACGCAACGATGTGCGCCATTATCGCCTAGTTCATTCGTGACCTTCTCGACTTCGCCGG 284 Query 36660 ACTAAGTAGCAATCTCGCTTATATAACGAGCGTGTTCATCGGCTACATCGGTACTGACTC 36719 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 283 ACTAAGTAGCAATCTCGCTTATATAACGAGCGTGTTTATCGGCTACATCGGTACTGACTC 224 Query 36720 GATTGGTTCGCTTATCAAACGCTTCGCTGCTAAAAAAGCCGGAGTAGAAGATGGTGGAAA 36779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 223 GATTGGTTCGCTTATCAAACGCTTCGCTGCTAAAAAAGCCGGAGTAGAAGATGGTAGAAA 164 Query 36780 TCAATAATCAACGTAAGGCGTTCCTCGATATGCTGGCGTGGTCAGAGGGGACTGATAACG 36839 |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| Sbjct 163 TCAATAATCAACGTAAGGGGTTCCTCGATATGCTGGCGTGGTCGGAGGGAACTGATAACG 104 Query 36840 GACGTCAGAAAACCAGAAATCATGGTTATGACGTCATTGTTGGCGGAGAGCTATTCACTG 36899 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 103 GACGTCAGAAAACCAGAAATCATGGTTATGACGTCATTGTAGGCGGAGAGCTATTTACTG 44 Query 36900 ATTACTCCGATCACCCTCGCAAACTTGTCACGCTAAACCCAAA 36942 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 43 ATTACTCCGATCACCCTCGCAAACTTGTCACGCTAAACCCAAA 1 >seq243231 Length=365 Score = 605 bits (670), Expect = 7e-169 Identities = 353/365 (97%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 34726 GCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGTCAACG 34785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCGGTACGGTCAGAAAATACGTTGATGATAAAGACGGGAAAATGCACGCCATCGTCAACG 60 Query 34786 ACGTTCTCATGGTTCATCGCGGATGGAGTGAAAGAGATGCGCTATTACGAAAGAATTGAT 34845 |||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||| Sbjct 61 ACGTTCTCATCGTTCATCGCGGATGGAGGGAAAGAGATGCGCTACTACGAAAAAATTGAT 120 Query 34846 GGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTG 34905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGCAGCAAATACCGAAATATTTGGGTAGTTGGCGATCTGCACGGATGCTACACGAACCTG 180 Query 34906 ATGAAAAAACTGGAGACGATAGGATTCGACACCAAAAAAGACCTGCTTATCTCGGTTGGC 34965 ||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 181 ATGAACAAACTGGATACGATTGGATTCGACAACAAAAAAGACCTGCTTATCTCGGTGGGC 240 Query 34966 GATTTGGTTGATCGCGGTACAGAGAACGTCGAATGCCTGGAATTAATCACATTCCCCTGG 35025 |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 241 GATTTGGTTGATCGTGGTGCAGAGAACGTTGAATGCCTGGAATTAATCACATTCCCCTGG 300 Query 35026 TTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGCGTGGA 35085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATGGCTTATCAGAGCGTGGA 360 Query 35086 AACGT 35090 ||||| Sbjct 361 AACGT 365 >seq237293 Length=409 Score = 347 bits (384), Expect = 3e-91 Identities = 245/280 (88%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 31471 AGCCATGAGGAAACGAACGTTTGAACTAAGAAGCCCAATTCATCAGCAGAACGCCATTCA 31530 || ||||| |||| ||| |||||| | || ||| |||||||| ||||| ||||| Sbjct 280 AGTCATGAAAAAACTAACCTTTGAAATTCGATCTCCAGCACATCAGCAAAACGCTATTCA 221 Query 31531 AGCTATCCAGCAAATTCTTCCAGACCCAATCAAACCAATCGTAGTAACCATTCAGGAACG 31590 || | |||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 220 CGCAGTACAGCAAATCCTTCCAGACCCAACCAAACCAATCGTAGTAACCATTCAGGAACG 161 Query 31591 CAACCGCAGCTTAGACCAGAATCGAAAGCTTTGGGCTTGCCTTGGTGACGTCTCTCGTCA 31650 |||||||||||||||||| || || ||||| ||||| | | | |||| |||||||||||| Sbjct 160 CAACCGCAGCTTAGACCAAAACCGGAAGCTATGGGCCTTCTTAGGTGGCGTCTCTCGTCA 101 Query 31651 GGTTGAATGGCATGGTCGCTGGCTGGATGCAGAAAGCTGGAAGTGCGTTTTTACAGCAGC 31710 ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 100 GGTTGAATGGCATGGTCGCTGGCTGGATGCAGAAAGCTGGAAGTGTGTGTTTACCGCAGC 41 Query 31711 ATTAAAGCAGCAGGACGTTGTTCCTAACCTTGCCGGGAAT 31750 ||||||||||||||| |||||||||||||||||||||||| Sbjct 40 ATTAAAGCAGCAGGATGTTGTTCCTAACCTTGCCGGGAAT 1 Score = 134 bits (148), Expect = 3e-27 Identities = 76/77 (99%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 30315 GATGACCATCTACATAACTGAGCTAATAACAGGCCTGCTGGTAATCGCAGGCCTTTTTAT 30374 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GATGACCATCTACATTACTGAGCTAATAACAGGCCTGCTGGTAATCGCAGGCCTTTTTAT 295 Query 30375 TTGGGGGAGAGGGAAGT 30391 ||||||||||||||||| Sbjct 294 TTGGGGGAGAGGGAAGT 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124066873012390