Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq50110 120 4e-22 seq109713 118 1e-21 seq191736 96.9 4e-15 >seq50110 Length=15533 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || || ||||| || || || || ||||| ||||| | ||| | Sbjct 3963 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCTCTCTTCT 4022 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||| | Sbjct 4023 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 4082 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 4083 CAACCACTCTCTCACC 4098 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/113 (77%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 33665 CTTCTGTACAAAATCGTTC-CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 |||||||| || | ||| | ||| |||||||| || ||||| ||||||||||||||| Sbjct 8704 CTTCTGTA---AAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAA 8760 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 || |||| ||||| ||||| |||||||| |||| | | || || ||||| Sbjct 8761 AATGCCAGAACATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCA 8813 >seq109713 Length=16520 Score = 118 bits (130), Expect = 1e-21 Identities = 100/122 (82%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 3688 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3629 Query 33386 TAAGCCAAAATA-TGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33444 | |||||||| | | || || || || |||||||||||||||||||| ||||| |||||| Sbjct 3628 TCAGCCAAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAG 3569 Query 33445 GC 33446 || Sbjct 3568 GC 3567 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| ||||| || || || ||||| || || ||| Sbjct 4997 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAATTGGTCTTGCCT 4938 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || ||||||||||| ||||| ||||| Sbjct 4937 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4903 >seq191736 Length=12127 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 3302 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3361 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 3362 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 3420 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 3421 CTCCAGGTAGATGGCAAAAGCCCCAGG 3447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619011583114040