Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq109713 113 6e-20 seq50110 105 8e-18 seq191736 96.9 4e-15 >seq109713 Length=16520 Score = 113 bits (124), Expect = 6e-20 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 3688 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3629 Query 32743 TAAGCCAAAATA-TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 | |||||||| | | || ||||| || ||||||||||| |||||||| ||||| |||||| Sbjct 3628 TCAGCCAAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAG 3569 Query 32802 GC 32803 || Sbjct 3568 GC 3567 >seq50110 Length=15533 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | || ||||| || || || || ||||| ||||| | ||| | Sbjct 3963 CCTCATCTCTGCTAATAAGCTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCTCTCTTCT 4022 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 4023 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 4082 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 4083 CAACCACTCTCTCACC 4098 >seq191736 Length=12127 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 3302 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 3361 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 3362 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 3420 Query 63190 TTCCAAGTATATGGCCATAACTCCAGG 63216 |||| ||| ||||| | | | ||||| Sbjct 3421 CTCCAGGTAGATGGCAAAAGCCCCAGG 3447 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 9326 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 9385 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | || || || || |||| || || || || || |||| || ||||| || |||| Sbjct 9386 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCCGCCGTTTCAGCAGCCAGCGTATCCA 9445 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || |||||| | || | || || || |||||||| Sbjct 9446 GTTCCACTGTCGTGACACCACTGTACAGCCCCTGAATCACCTTCAT 9491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629628879352400