Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq39562 140 4e-28 seq83088 109 6e-19 seq435555 93.3 5e-14 >seq39562 Length=8284 Score = 140 bits (154), Expect = 4e-28 Identities = 527/815 (65%), Gaps = 20/815 (2%) Strand=Plus/Minus Query 162190 CACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACATCC 162249 || || || || ||||| || || |||| || || || | || || | | |||||| Sbjct 4404 CAGACAGAGCGAACGTGAACTCCATTGCATGGTGGGTAGGGTGCACCTTTGGACACATCA 4345 Query 162250 CCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTAC 162309 || || |||| |||||||| || ||||| | | || | |||||| || ||||||| Sbjct 4344 CCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCGTAC 4285 Query 162310 TTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAG 162368 || | |||| || | || || || || || | || | |||||| | || |||||||| Sbjct 4284 TTCT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCACAG 4226 Query 162369 GTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTATC 162428 || || ||||| || || || || || | |||||| ||||||| | | |||| Sbjct 4225 GTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT---TAAGTATTTTGCT 4169 Query 162429 G---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 | | || | || | || | ||| | || | ||| || || ||||||||||| Sbjct 4168 GCTTTCTAATACATATGCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAA 4109 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | || | | | ||| || | | ||||||| || ||||| || | || || Sbjct 4108 AATTGGAGTACTAAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATC 4049 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGT-AGACGGGTGTTCGGTCT 162604 | | | | || || ||||||| | |||| || || | | ||| || | Sbjct 4048 AATAATCTCATGGTGTTTTTTCCACCTTACT-TCTTTATGAAGAGGCATTTTTTCTGTTT 3990 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | | ||||| ||| | ||| || | | || || ||| | |||||||| | Sbjct 3989 CCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCTTGGTTGGTCTTTA 3930 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCA--CTTAACGCTGAGTCCGTA 162722 |||||||| |||| ||||| || || | |||||||| || ||| | || ||| Sbjct 3929 TAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTCTGAAC--TTCTTCTGTA 3872 Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||||| | | ||||| | || ||||| || | ||||| || || || || || || Sbjct 3871 GAGATCTTTCATGCAGTTAATGTCTGCCTGTACCCTGCTCCATGAAGCATATACAACACT 3812 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 ||| ||| ||| | ||||||||| || |||||||| ||||| ||| |||| || || Sbjct 3811 CTCTAACTGGCTGGAAATAAAGACATTATCAAAACACGAGACTATTCCCTTCACAGC-AG 3753 Query 162843 TGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 | || | || || ||| | || || || | |||||| | |||||||||||| Sbjct 3752 CAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATGCAGTAAAAATTCTGAGGGGC 3695 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 ||||| | || || | ||| || | |||||| || || || | ||||| | || || Sbjct 3694 ATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTACTGAGTA 3635 Query 162960 CGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || ||||||| Sbjct 3634 GGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 3600 >seq83088 Length=6024 Score = 109 bits (120), Expect = 6e-19 Identities = 310/467 (66%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 162589 GACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATC 162648 || |||| || | ||| | ||||| || ||| || |||||| ||| || ||| Sbjct 102 GAGGGGTTCTCTGACTCCATGCTGTTCCGCCCCTGCAGCAGCTTCAGGGCACGGACGATC 161 Query 162649 TCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTA 162708 || ||||||||| | ||| || |||||||| ||| || | || |||| Sbjct 162 TCAGCATTGGTCTTGATGGGGAAATCGGTGCCACAGGTGTTGAGGTTGTAGCGCCACGGC 221 Query 162709 ACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGA 162767 ||| | || | | ||| ||||| | ||||| || |||||||| | || ||| || Sbjct 222 ACGGGGC-TCTGCAACAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGA 280 Query 162768 CGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTAT 162827 || || || || | |||| | | || |||||||||||| ||| || | || || Sbjct 281 GGCATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTACGAT 340 Query 162828 CCCCATCACGGCCAGTGAGAACATCGGGTCCG----CTTTCCTATCTACGTGTACGCAGT 162883 || ||||||| ||| ||| ||| ||| || || ||||| ||||||| Sbjct 341 GGCCCGCACGGCCTCCTGGAAGG-CGG--CCGGGGACTTGCCG-TCAACGTGGACGCAGT 396 Query 162884 ATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGT 162943 | | ||||| |||||||||| || || ||| | | |||||||||||| || || | || Sbjct 397 AGACGTTCTGGGGGGCGTAGAGGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTTGT 456 Query 162944 GTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAA 163003 | | || || || || || ||||||||||| |||||||| | || || | | || Sbjct 457 GGATGACCATGGAGTAGGCGATGGGGAACTCCGCCTCCTCCTGGCTCAGCGGCAACTCAA 516 Query 163004 AGTACTTGCGGTCC-CTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | || | ||| || | ||| | || | ||||||||||||| ||| Sbjct 517 TGAACCTCCGGGCCTCCTGCAAGCTCC-CGCAGTCCTCCGTCAGGTT 562 >seq435555 Length=6688 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || ||||| |||||||| | ||||| |||||||||| || || ||| | | ||||||| Sbjct 843 TCAACGTGGACGCAGTAGACGTTCTGGGGGGCGTAGAGGGACCGCAGGAGCCGCTCGAAC 902 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || | ||| | || || || || || ||||||||||| |||||||| Sbjct 903 ATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCCGCCTCCTC 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574777618462400