Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq109713 114 1e-20 seq121029 104 2e-17 seq50110 95.1 1e-14 seq409971 86.0 5e-12 seq203729 86.0 5e-12 >seq109713 Length=16520 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 1223 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 1282 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 1283 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 1330 >seq121029 Length=35959 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 24217 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 24276 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 24277 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 24336 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 24337 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 24373 >seq50110 Length=15533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | || |||||||| |||||||| || || ||||| || ||||||||| Sbjct 4086 GTTGCTTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 4027 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| |||| ||||||||||| |||| || || |||||| | || || | ||| Sbjct 4026 CTGAAGAAGAGAGGCCTGATGCCTGGGCTGACTTTCTCCAATGAGCTTATTAGCAGAGAT 3967 Query 44255 GA 44256 || Sbjct 3966 GA 3965 >seq409971 Length=7528 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 6273 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 6214 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||||| | | || ||| ||||| |||||| || | Sbjct 6213 AGCGGGTTTCGGAATATCAGCGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 6154 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 6153 CTCTGGATGCAGATTT 6138 >seq203729 Length=15025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 1160 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 1219 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||||| | | || ||| ||||| |||||| || | Sbjct 1220 AGCGGGTTTCGGAATATCAGCGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 1279 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 1280 CTCTGGATGCAGATTT 1295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395007752891095