Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq83088 221 2e-52 seq435555 168 9e-37 seq390380 96.9 5e-15 >seq83088 Length=6024 Score = 221 bits (244), Expect = 2e-52 Identities = 302/422 (72%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 13615 TGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTGAGGCCCC 13674 ||||| |||||| ||||||| | ||| | | | | || ||| | | | ||| | Sbjct 564 TGAACCTGACGGAGGACTGCGGGAGCTTGCAGGAGGCCCGGAGGTTCATTGAGTTGCCGC 505 Query 13675 TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCG 13734 |||||| ||| |||| ||||| |||||||||||||| || || |||||| |||| |||| Sbjct 504 TGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCG 445 Query 13735 AGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACG 13794 ||||||||||||| |||||| || || |||||||||| |||||| ||||||||||||||| Sbjct 444 AGATGTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCGTCCACG 385 Query 13795 TGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCC 13854 | ||| ||||||| | || ||| || ||| |||||||| ||||||| Sbjct 384 TTGACGGCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGCTTCC 325 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGC 13914 | || || |||| ||| ||| | | ||||| || | ||||||| || ||| Sbjct 324 CCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGC 265 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||||||||||| ||||||| ||||||| |||||| |||| | ||| | Sbjct 264 AGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCGTGCCGTGGCGCTACAACC 205 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 ||||| || || | || ||||| |||||||||| |||||||| || || |||| Sbjct 204 TCAACACCTGTGGCACCGATTTCCCCATCAAGACCAATGCTGAGATCGTCCGTGCCCTGA 145 Query 14035 AG 14036 || Sbjct 144 AG 143 >seq435555 Length=6688 Score = 168 bits (186), Expect = 9e-37 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 13601 GCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTA 13660 ||| || || ||| ||||||||||| ||||||| |||| | | | | || ||| Sbjct 1040 GCCCGGCGAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAGGAGGCCCGGAGGTT 981 Query 13661 TCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGAT 13720 | | | || ||||||| ||| |||| ||||| |||||||||||||| || || || Sbjct 980 CATTGAGTTCCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTCAT 921 Query 13721 CCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCT 13780 |||| |||| ||||||||||||||||| |||||| || || |||||||||| |||||| | Sbjct 920 CCACAACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGT 861 Query 13781 CTACTGCGTCCACGTGGACTCCAAGTCC 13808 ||||||||||||||| ||| ||||||| Sbjct 860 CTACTGCGTCCACGTTGACGGCAAGTCC 833 >seq390380 Length=495 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13918 CCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA 13977 |||||||| ||||||| |||||| ||||| | || ||| | |||||||||| Sbjct 326 CCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCTGTGCCCTGGCGCTACCTGCTCA 385 Query 13978 ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGG 14037 || ||||| ||||||||| | |||||||||| ||||||||| ||| |||||||| Sbjct 386 ACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGAAGG 445 Query 14038 CCCTGGGCGGCAAGAACG 14055 ||| || || ||||||| Sbjct 446 GCCTCGGGGGGAAGAACG 463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654577458653440