Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciconia_20boyciana_20[genbank_20GCA_5F002002965.1_202017-02-09] 505,419 sequences; 1,364,945,554 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq51987 143 4e-29 seq53290 84.2 3e-11 >seq51987 Length=74397 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| || ||| |||||||| || |||||||| Sbjct 63336 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCCTCCCACTCTGGATGCTCCTGTTTCAGG 63277 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 63276 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 63217 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| | || || || |||| | ||| || || || || | ||||| Sbjct 63216 ACCAAACCAAACACTTCCTGCCCAACAGAAAACTGCAAGTGCTCAGGTACATGAGGAGGG 63157 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| || || || | || ||||||||||| || ||||||||| Sbjct 63156 TAGATCATCTCTGCCTGAGTTTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 63097 Query 9484 TG 9485 || Sbjct 63096 TG 63095 Score = 143 bits (158), Expect = 4e-29 Identities = 175/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| ||||||||||| |||||||||||| | ||||||||||| | || Sbjct 65264 AAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGGAGCAGATAGCATTT 65205 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || ||||| || || || | ||| | || | ||||| |||||| Sbjct 65204 CCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTGTTTCACCAAAGATG 65145 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || || || |||||||| || ||||| || | ||||||||||| ||| || | ||| Sbjct 65144 GCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCCATAGCATCAATGTC 65086 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAAT 8595 ||| ||||| | || || || || || || ||||||||||| ||||| || Sbjct 65085 TCCATAAAGCTCTTCCAGCTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTGAT 65031 >seq53290 Length=16747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 181/271 (67%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || || ||||| | | || ||| ||| || ||| || || || || Sbjct 8234 CATCCGGCACACGAAACGCAACGTATGGGCACTTCTTCACATTGAGGCACACGAGTTTCT 8293 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 || | ||| |||| || ||| | || || |||| || || || ||||| |||| Sbjct 8294 CAAGCGATGCTGTCTTAACTATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCC 8353 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| |||||||| || | Sbjct 8354 AGTACTCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGA 8413 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || || | ||||| |||| || || | || || || Sbjct 8414 TCTCCACCATGCTTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCA 8473 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 || | |||| ||| || | |||||| || Sbjct 8474 GATAAAATTCCAGAGCATCAATGTCTCCATA 8504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712347760557760