Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq555 107 2e-18 seq3126 82.4 8e-11 >seq555 Length=166230 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 119851 CCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAA 119910 ||| | |||||| |||||||| |||||||| || || || | |||||| |||||||| Sbjct 108260 CCACATGCATCCGACGTATCCATTGGGATCAGTGCCGTCCAGGCTGTATTTGTCGTTTAA 108201 Query 119911 GTAGATACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGC 119970 ||| ||| | | ||| |||| | || |||| || || || || || || Sbjct 108200 GTATATAGCTCCTGCGAGTGCATCAGCAGGCGACTTCATCCACTCGAGCATCTTCTTCGC 108141 Query 119971 CCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGC 120030 ||||||||| || ||||| |||||||| || || || | | | ||| || ||||| || Sbjct 108140 CCAGTACATCCGCAAGTAGCCATGCATCTTTCCCTCCCTCATTAATTGCAGCTGTGCTGC 108081 Query 120031 GTTCCATAAGGGATCGT 120047 ||||||||||| ||||| Sbjct 108080 GTTCCATAAGGCATCGT 108064 >seq3126 Length=28506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || ||||| || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 13459 ATGTACGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGCAATCTGG 13400 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || || || || | || || ||||| Sbjct 13399 AAGCCATAGAAACAACGCGCCTCTGTGATCTGCACTTC 13362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517271501380920