Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq45 102 8e-17 seq3126 96.9 4e-15 seq555 93.3 4e-14 >seq45 Length=4641476 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| ||||| || || ||||| || | ||||| Sbjct 476400 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 476459 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||| ||||| ||||||||||| ||||||||||| || || ||||| | ||||| ||| Sbjct 476460 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 476519 Query 16346 A 16346 | Sbjct 476520 A 476520 >seq3126 Length=28506 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | |||||||||||||||||||||||| || ||||| ||||| Sbjct 13459 ATGTACGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGCAATCTGG 13400 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || ||||| | || || ||||| Sbjct 13399 AAGCCATAGAAACAACGCGCCTCTGTGATCTGCACTTC 13362 >seq555 Length=166230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 181/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 118937 TCATGTATCGTATCTTTCC-AAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||||| | || |||||| ||||| | | ||| || | | | ||||| || | Sbjct 108327 TCATGTACC-TAACTTTCCCAAATATTGGTCTCTCTTTAAAAGGTTGATCGTGCAGAGCG 108269 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 || | || ||| | ||||| |||||||| |||||||| || ||||| | ||| || Sbjct 108268 GCGATTGACCACATGCATCCGACGTATCCATTGGGATCAGTGCCGTCCAGGCTGTATTTG 108209 Query 119056 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtt 119115 ||||||||||| ||| | | ||| | || | ||| |||| || || || Sbjct 108208 TCGTTTAAGTATATAGCTCCTGCGAGTGCATCAGCAGGCGACTTCATCCACTCGAGCATC 108149 Query 119116 tttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGT 119175 || || ||||||||||| || || || || ||||| || ||||| | || | || || Sbjct 108148 TTCTTCGCCCAGTACATCCGCAAGTAGCCATGCATCTTTCCCTCCCTCATTAATTGCAGC 108089 Query 119176 TGTGCGGTGTTCCATAGAGGATCGT 119200 ||||| | |||||||| | ||||| Sbjct 108088 TGTGCTGCGTTCCATAAGGCATCGT 108064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511143548541080