Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 seq33 89.7 4e-13 >seq23 Length=5954011 Score = 111 bits (122), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 || ||| ||||||| || | ||||||||| |||| | ||| || |||||||||||||| Sbjct 3155878 AGCTCCCTGCTGAGCACTATATTAATTCTATCTTTCAGAGGACGATTCTTCTCAGGAATG 3155819 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||| || ||||||||||| |||||| |||||||||| ||| Sbjct 3155818 GAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 3155773 >seq33 Length=5235935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || || || | || || | Sbjct 587771 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAGTCCCCCT 587830 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| || ||||||| | || | || ||||| |||||||||| Sbjct 587831 CTTCTCTGGTGTAAAACCCCTGTTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAA 587890 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | || || ||| || ||||||||| Sbjct 587891 TCTTTACACCCTTTGCAGAGAGCTCTTTG 587919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361064659927619