Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1287 98.7 9e-16 >seq1287 Length=55868 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| || || || || || || |||||| || Sbjct 31600 ATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCA 31541 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| || || ||||| | || ||| || Sbjct 31540 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCAG 31481 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||| || ||||| || || ||||||||| || ||| | | || |||||| Sbjct 31480 CAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAAT 31421 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||| | || ||||| | || || || ||||| Sbjct 31420 ATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGG 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428114819202695