Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq81 190 2e-43 seq2134 116 5e-21 >seq81 Length=3639300 Score = 190 bits (210), Expect = 2e-43 Identities = 228/307 (74%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 83089 GGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT 83148 ||||| | || | ||||||| | ||| | |||| |||||| | |||||| | |||||| Sbjct 32652 GGTCTCGAAGTGCCGGCTGTAGCGGCGGAAGGGCACGCCGTCGGGACCCACGAGGAACTT 32593 Query 83149 CTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTC 83208 |||||||||||||| | ||||||||||||||| || |||||| ||| ||| |||| Sbjct 32592 CTCGAAGTTCCAGGAGATGTCGTTGCGGCACACCGGCGACCAGATGATGTACTGCGGGTT 32533 Query 83209 GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAA 83268 | ||| |||| ||||||| || ||||| ||||||| |||| | |||| Sbjct 32532 GGTCATCAGCGCAGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTCTCAGGAGGACGAA 32473 Query 83269 GAGCGGATGTGC-CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCT 83327 ||||| || || |||| | ||||| |||||||| |||||||| | | ||||| |||| Sbjct 32472 CAGCGGGTGCGCGCCTTTC-CCGTTCACCTCGCATTTCTCGAACACGGTGAAGTTGGGCT 32414 Query 83328 CGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGT 83387 ||||||||| || || || ||||||| ||| || |||||||||| | || ||||| Sbjct 32413 TGAAGCCGTTGCCGGGCCGCACGTGCTCCAGCGAGAGCAAGATCTCCTCGTTGGTGGCGT 32354 Query 83388 TTTCCTG 83394 | ||||| Sbjct 32353 TCTCCTG 32347 >seq2134 Length=38510 Score = 116 bits (128), Expect = 5e-21 Identities = 122/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 3590 GTTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGG-- 3533 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 ||| || |||||||| ||| | ||| ||||| |||| |||||| | |||||||| || Sbjct 3532 TAG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAATCCCTCACCGTGGTCCCTCAGAGCGA 3474 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||| |||||||||||||| | || || || || |||| Sbjct 3473 CGCCACGTTCTCGATGAGGACCACGCGCCCGCGGAAGA 3436 Score = 100 bits (110), Expect = 3e-16 Identities = 241/350 (69%), Gaps = 20/350 (6%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCA--CGGCCAGGGTCTGGCA-GCGGTGGCTGTACCT 83112 ||| ||| || |||||||||||| | || | ||| |||| ||| ||||||| | Sbjct 3997 GAGGAGGCGCTGGATGTCGGGCTCTATCTGGGC--GGT-GGGCAGGCGAGGGCTGTAGCG 3941 Query 83113 GCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTT 83172 || | || || || | ||||||| ||||||||| |||||||||| | |||| Sbjct 3940 CCGGAAAGGTTCCCCCTCGGGCCCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGA 3881 Query 83173 GCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCG 83230 ||| | ||| || ||| | | || |||| ||| ||| || ||| || || ||| Sbjct 3880 GCGCCGCACGGGGCTCCACACCAGGAAACGGGGTTCGGTCATCAG-GTGATC-TGCCTCG 3823 Query 83231 TCGCTAGGCGCCGGCA---GGGCCTCTCGTAGGAAGGCGAAGAGCGGAT--GTGCCCTTG 83285 || || || |||| |||||| || ||| ||||||||| || | ||| || || Sbjct 3822 TCCACGGGGGCGGGCAGGTGGGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCC-TG 3767 Query 83286 CACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGAC 83345 | ||||| |||| |||||||| ||| || | ||||| ||||||||||| ||| || | Sbjct 3766 C-CCGTTCACCTGGCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCC 3708 Query 83346 GGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | |||||||| ||| | | |||||| | || | |||| |||||| Sbjct 3707 GCACGTGCTTGAGGCAGTTGAGGATCTCCTCGTTGGTGCCGTTCTCCTGG 3658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608474373604760