Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 172 6e-38 seq6222 154 2e-32 seq3126 116 4e-21 seq1287 111 2e-19 seq479 107 2e-18 seq647 95.1 1e-14 seq231 87.8 2e-12 seq45 84.2 2e-11 >seq1 Length=14292544 Score = 172 bits (190), Expect = 6e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| || Sbjct 9556638 AACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 9556579 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| |||||| || || | ||||| || ||||||||| | || Sbjct 9556578 AGCGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGA 9556520 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 9556519 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 9556460 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| |||||||| || ||||| ||||||| ||| Sbjct 9556459 CAACATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGAGGC 9556408 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 9556179 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGT 9556120 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| | || || Sbjct 9556119 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCA 9556061 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 9556060 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 9556001 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||||||| || ||||| ||||||| || Sbjct 9556000 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGTGG 9555953 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || ||||| ||| Sbjct 9556407 ATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGAGCCCAGT 9556348 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||||||| |||| || Sbjct 9556347 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCA 9556289 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 9556288 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 9556229 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 9556228 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 9556181 >seq6222 Length=16261 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| |||| ||||| ||| Sbjct 567 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 626 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | |||||||| ||||| || | || || Sbjct 627 GACACCATTGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 685 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 686 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 745 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| |||| ||||||| ||| Sbjct 746 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 794 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || || ||| Sbjct 1023 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 1082 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | |||||||| ||||| || | || || Sbjct 1083 GACACCATTGAAAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 1141 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1142 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTGTCCGACTACAA 1201 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| |||| ||||||| ||| Sbjct 1202 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 1250 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || || ||||| ||||||||| | || ||||| | Sbjct 335 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 394 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | | | |||| || || | |||||||| ||||| || | || Sbjct 395 TAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGA 454 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 455 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 514 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| || |||| ||||| || ||| |||| ||||||| ||| Sbjct 515 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGGC 566 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| || ||||| | || ||||| ||| Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | |||||||| ||||| || |||| ||| Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 914 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 915 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 974 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 975 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGGC 1022 >seq3126 Length=28506 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||| ||||| ||||||||||| || |||||| |||||||||| || |||| ||| Sbjct 12491 GAACCGCTTCTGCGGGAGAACCCCCGGCGCTTCGTGGTTTTCCCCATCCAGTACCACGAC 12550 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| | |||||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 12551 ATCTGGAGGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACGGCGGAGGAGGTG 12604 >seq1287 Length=55868 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| |||||||| || || || || ||||| | || || || | Sbjct 31832 AAAAATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCC 31773 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | || |||| | |||| ||||||| ||||||||||| |||||| | | Sbjct 31772 GTCGGACACGATTGAGAACG-TGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTG 31714 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || | || | |||||| || |||||||| || | | || || |||| Sbjct 31713 ATCAGCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACT 31654 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||| |||||||| | || || || | || | ||| | ||||| ||| Sbjct 31653 ACAACATTCAGAAGGAATCTACCCTTCACTTGGTTCTCCGCCTAAGGGGTGGC 31601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || ||| | || || ||||||||||| | || || ||| | | Sbjct 31373 AATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATC 31314 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | || | ||| || | ||||||||||| || || | ||||| Sbjct 31313 AGACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 31254 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || |||||||| || |||| | || || |||||||| Sbjct 31253 ACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAA 31194 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | ||||| || || || | || ||| |||| || Sbjct 31193 CATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGG 31146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || | || || ||| | | Sbjct 31600 ATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCA 31541 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| ||||| || ||||| || | |||||| Sbjct 31540 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCAG 31481 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | |||||| || |||||||| || | | || || |||||||| Sbjct 31480 CAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAAT 31421 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| | || ||||||| ||| |||| ||| | || || Sbjct 31420 ATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGG 31374 >seq479 Length=216575 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || ||| | || Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| || || || ||||| |||| | || ||| ||||||||| Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 29652 ATCCAGAAGGAATCTACCCTTCATCTGGT 29624 >seq647 Length=124777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 117043 GGTGGCCTTC-GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||| || || || |||||| || | ||| || |||||| |||||| | || Sbjct 8582 GGTGGCCTTTTGCTGC-GTTGAGGGCATCCTTTTTAGCGGGAGTTTCTGCGCCATCTATT 8640 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| |||||||| || | ||||| || || || || |||||||| |||||||||| Sbjct 8641 GGCTGAAGAAACGAGGATTAATGCCGGGACTTACGTTTTCGAACGAGCTAATCTCCAGGG 8700 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 |||||||| | ||| || ||||| || | |||| Sbjct 8701 ACGAGGGTTTACATGCAGATTTTGCTTGCCTACTGT 8736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 116637 TGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGT 116696 ||||| |||||||| ||| || || || |||||||| | || ||||| ||||| Sbjct 4821 TGTGGGAGATGTACAAGAAGCAGGAAGCCTCTTTCTGGACTGCGGAAGAGGTTGACCTTG 4880 Query 116697 CCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACG 116756 | |||||| || |||||||| || | ||| |||||| || || |||||||| | | Sbjct 4881 CGCAGGACATGACGCACTGGGAGAGCCTAAACAGCAACGAACGGCACTTCATCAAATATG 4940 Query 116757 TGCTGGCCTTTTTCGCCGCCAG 116778 |||||||||| || || ||||| Sbjct 4941 TGCTGGCCTTCTTTGCTGCCAG 4962 >seq231 Length=1120191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| |||||| || |||||||| |||| ||| Sbjct 829032 GGGATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGACGGCCGC 829091 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || ||| |||||||||||||||||| Sbjct 829092 ACGCTCGCCGACTACAACATCCAGAA 829117 >seq45 Length=4641476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 476523 TGGTCGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTT 476464 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 476463 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 476404 Query 117162 ACGAGG 117167 | |||| Sbjct 476403 ATGAGG 476398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514946333471440