Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1287 145 1e-29 seq555 93.3 6e-14 >seq1287 Length=55868 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| |||| ||||| ||||| ||| | ||| | || || Sbjct 31145 AATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATC 31086 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || ||||||||||||||| ||||| || || ||||| || Sbjct 31085 TGATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCA 31026 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| ||||||||| | ||||| | |||| || || ||||| Sbjct 31025 ACAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAA 30966 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 |||||||| ||||||||| | |||||||| || | |||| ||||||| Sbjct 30965 CATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACTACGTGGTGGTA 30916 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | ||||| || || ||||| | ||| | ||| | Sbjct 31600 ATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCA 31541 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||||||| || || ||||| || || || || || Sbjct 31540 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCAG 31481 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| |||||||||| || || || || | || ||| | ||||| || || || ||| Sbjct 31480 CAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAAT 31421 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||||||||||||| |||| | || || || || || || ||| || Sbjct 31420 ATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGGAATGCAAATTT 31363 >seq555 Length=166230 Score = 93.3 bits (102), Expect = 6e-14 Identities = 179/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 202778 CATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTA 202837 |||||| || || |||| || |||| ||| |||||||||||||| ||||| | | | | Sbjct 108340 CATCCTGCAAAAGTCATGTACCTAACTTTCCCAAATATTGGTCTCTCTTTAAAAGGTTGA 108281 Query 202838 TCATGAATACCACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCT 202897 || || | | | ||||||||||| ||||| || |||||||| |||||| || || Sbjct 108280 TCGTGCAGAGCGGCGATTGACCACATGCATCCGACGTATCCATTGGGATCAGTGCCGTCC 108221 Query 202898 ATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTC 202957 | ||||| || ||||| | | ||| || | || || || || Sbjct 108220 AGGCTGTATTTGTCGTTTAAGTATATAGCTCCTGCGAGTGCATCAGCAGGCGACTTCATC 108161 Query 202958 CATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATA 203017 || || | || || || ||||| ||||| | || || |||||||| || || | | Sbjct 108160 CACTCGAGCATCTTCTTCGCCCAGTACATCCGCAAGTAGCCATGCATCTTTCCCTCCCTC 108101 Query 203018 ATCATTTGTTTTTGTGATGCATTCCATAA 203046 || | ||| |||| ||| |||||||| Sbjct 108100 ATTAATTGCAGCTGTGCTGCGTTCCATAA 108072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755055901059200