Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq25 387 2e-102 >seq25 Length=5881665 Score = 387 bits (428), Expect = 2e-102 Identities = 245/262 (94%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 1860 CCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCGCCCTGGGGT 1919 |||| |||| | |||||||||||||| ||||||| |||||||| | |||||||||||| Sbjct 4761734 CCACAACAAAACACAAAAAACGTCAGCGTGGGGTCCGCTCGCCCCGAACCGCCCTGGGGT 4761793 Query 1920 CCTCGCCCGCA-GGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCT 1978 || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4761794 CCCCGCTCGCACGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCT 4761853 Query 1979 CTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgcccccagcagagca 2038 |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| Sbjct 4761854 CTGTCAGCCTCGGCGGCGCCCGGGAGCTGCG--GCGCGGCCCCGCGCCCCCAGCACAGCA 4761911 Query 2039 acacgggagcggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGCGGA 2098 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4761912 ACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCG-CCCCCTGCGCCGTGGGGCGCGCGGA 4761970 Query 2099 CGGCGTCGCTCCCACACGCGCG 2120 |||||||||||||||||||||| Sbjct 4761971 CGGCGTCGCTCCCACACGCGCG 4761992 Score = 387 bits (428), Expect = 2e-102 Identities = 245/262 (94%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 139500 CGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggttgc 139559 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4761992 CGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAGGGGG-CGCGGGGGTTGC 4761934 Query 139560 cccgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgcgcCGCATCTCC 139619 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct 4761933 CCCGGGGGCGCCGCTCCCGTGTTGCTGTGCTGGGGGCGCGGGGCCGCGC--CGCAGCTCC 4761876 Query 139620 CGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCGGCC 139679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4761875 CGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCGGCC 4761816 Query 139680 GACCGCGGCC-TGCGGGCGAGGACCCCAGGGCGGATGGGGGCGAGAGGACCCCTCGCTGA 139738 |||||||||| |||| ||| |||||||||||||| | |||||||| ||||||| |||||| Sbjct 4761815 GACCGCGGCCGTGCGAGCGGGGACCCCAGGGCGGTTCGGGGCGAGCGGACCCCACGCTGA 4761756 Query 139739 CGtttttttttGTTTGCCGTGG 139760 |||||||| | |||| |||| Sbjct 4761755 CGTTTTTTGTGTTTTGTTGTGG 4761734 Score = 374 bits (414), Expect = 1e-98 Identities = 286/333 (86%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 1485 GGGCGGGGCACGTGCATGGGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCC 1544 ||||||| | || ||| | |||||||||||||||| |||||||| | ||||||||||| Sbjct 4761200 GGGCGGGCC-CG-GCACGCCGCGTGGCGGGAGATGAGCGACCGCGGGGATCCAAACTCCC 4761257 Query 1545 GC-ACCGGCCCCTCTCTGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTAC 1603 || |||| |||||||| || |||||||| | | | |||||| || |||||||||| | Sbjct 4761258 GCCACCGTCCCCTCTCCGCCCGCTCTCCCGCTCTCGGCCAATGGCGGGGCGGCAGCGTGC 4761317 Query 1604 AGCCCGGCCAATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGAGCCCC--ACGC 1661 || ||||||||||| || |||||||||| | ||||||| |||||||||||||| |||| Sbjct 4761318 GGCTCGGCCAATAGGAGCTCGGTGGGCGTGGCCGGAGGAGGCTACAAGAGCCCCCCACGC 4761377 Query 1662 GGGGTTCCCCCGGCACACGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGAG 1721 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4761378 GGGGTTCCCCCGGCACGCGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGGT 4761437 Query 1722 GTATTGATGGTACTGTCGCCGCGCTCCCT--------CCGCCCGCTG-TTTACTCGCTGA 1772 ||||||||||| ||||||||||||||||| |||||||||| |||||||||||| Sbjct 4761438 GTATTGATGGTGCTGTCGCCGCGCTCCCTCCGCCCGCCCGCCCGCTGTTTTACTCGCTGA 4761497 Query 1773 CTTTCAGCGGGCTAGGGGAGCCGCCCCAGGGGG 1805 |||||||||||| |||||||||||||||||||| Sbjct 4761498 CTTTCAGCGGGCGAGGGGAGCCGCCCCAGGGGG 4761530 Score = 372 bits (412), Expect = 3e-98 Identities = 285/332 (86%), Gaps = 14/332 (4%) Strand=Plus/Minus Query 139816 CCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGTAAA-CAGCGGGCGG----- 139869 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 4761529 CCCCTGGGGCGGCTCCCCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGGCGGG 4761470 Query 139870 ---AGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGC 139926 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 4761469 CGGAGGGAGCGCGGCGACAGCACCATCAATACACCCGATTAGGGTTAGACACAGCGGAGC 4761410 Query 139927 CTTCCACCCGCCACGTGTGCCGGGGGAACCCCGCGT--GGGGCTCTTGTAGCTTCCTCCG 139984 ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| Sbjct 4761409 CTTCCACCCGCCACGCGTGCCGGGGGAACCCCGCGTGGGGGGCTCTTGTAGCCTCCTCCG 4761350 Query 139985 CCTACGCCCACCGCGCGCCTATTGGCCGGGCTGTACGCTGCCGCGTAGCTATTGGCGGCG 140044 | |||||||||| || ||||||||||| || | |||||||||| || |||||| | | Sbjct 4761349 GCCACGCCCACCGAGCTCCTATTGGCCGAGCCGCACGCTGCCGCCCCGCCATTGGCCGAG 4761290 Query 140045 GGGAGGAGAGCGAGCAGAGAGGGGCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCAT 140103 | |||||||| || |||||||| |||| ||||||||||||| | |||||||| |||| Sbjct 4761289 AGCGGGAGAGCGGGCGGAGAGGGGACGGTGGCGGGAGTTTGGATCCCCGCGGTCGCTCAT 4761230 Query 140104 CTCCCGCCACGCCCCATGCACGTGCCCCGCCC 140135 |||||||||||| | ||| || | ||||||| Sbjct 4761229 CTCCCGCCACGCGGCGTGC-CG-GGCCCGCCC 4761200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 2449 GCTGAGCGCAGTGCGATGCCCCCGGGTCATCACCCGTCCCGCAGATCCCCGTGCACGGGG 2508 ||||||||| ||| | | ||||| |||| | |||| ||||| | ||| ||||| || || Sbjct 4762299 GCTGAGCGCCGTGAGGCGGCCCCGCGTCACCGCCCGCCCCGCGGCTCCACGTGCGCGTGG 4762358 Query 2509 TCAGTGCCATCTTGTGGTCTCGGCTTTC---TTT--TTTCCCCCTTTTGCACGAAGAGTC 2563 | | |||||||||||| |||||| ||| ||| | |||| ||| |||||| | || Sbjct 4762359 CCGGGGCCATCTTGTGGCCTCGGCGTTCCCATTTCCCTCCCCCATTTCGCACGAGGGATC 4762418 Query 2564 AGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGATGGAGAACCGTTGCTAGAATA 2623 | | | | ||| || | | ||| | |||||| ||| | || |||| |||| Sbjct 4762419 AACG-AGTGCGGGCGCTCCGTTACGGTTTCGTCGCGCGACGGAAACCCATTGCCAGAAGG 4762477 Query 2624 TGTGGGGATAGAGAAGTCCGATACCCTCAGAAATGTGCGAGTCCTGCGGGTAGA 2677 |||||| || ||||||||| | | | | || ||||| ||||||| || ||| Sbjct 4762478 TGTGGGCATGGAGAAGTCCAACGCGCCCGGAGGAGTGCGGGTCCTGCAGGCAGA 4762531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 138943 TCTACCCGCAGGACTCGCACATTTCTGAGGGTATCGGACTTCTCTATCCCCACATATTCT 139002 ||| || ||||||| ||||| || | | | | ||||||||| || |||||| |||| Sbjct 4762531 TCTGCCTGCAGGACCCGCACTCCTCCGGGCGCGTTGGACTTCTCCATGCCCACACCTTCT 4762472 Query 139003 AGCAACGGTTCTCCATCGCGCAATTAAAGCACGATTAAGTACCCCAAGTTCACTGACTCT 139062 |||| || | ||| |||||| | ||| | | || ||| | | | ||| | Sbjct 4762471 GGCAATGGGTTTCCGTCGCGCGACGAAACCGTAACGGAGCGCCCGCACT-CGTTGATCCC 4762413 Query 139063 TCGTGCAAAAGGGGGAAA--AAA---GAAAGCCGAGACCACAAGATGGCACTGACCCCGT 139117 |||||| ||| |||| | ||| ||| |||||| |||||||||||| | | || || Sbjct 4762412 TCGTGCGAAATGGGGGAGGGAAATGGGAACGCCGAGGCCACAAGATGGCCCCGGCCACGC 4762353 Query 139118 GCACGGGGATCTGCGGGACGGGTGATGACCCGGGGGCATCGCACTGCGCTCAGC 139171 ||||| ||| | ||||| |||| | |||| ||||| | | ||| ||||||||| Sbjct 4762352 GCACGTGGAGCCGCGGGGCGGGCGGTGACGCGGGGCCGCCTCACGGCGCTCAGC 4762299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568767414050160