Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1287 109 6e-19 seq101 105 8e-18 seq108 100 3e-16 seq14 100 3e-16 seq1 98.7 1e-15 seq776 82.4 9e-11 >seq1287 Length=55868 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | || |||| ||||| |||||| || ||||| ||||||||||| || | Sbjct 31373 TCCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGA 31432 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | | || || |||||||| || ||||| || || || |||||||| | ||| Sbjct 31433 TAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGG 31492 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||||| ||| |||| | || | || | | |||||| || ||||| Sbjct 31493 AATGCCTTCCTTGTCC-TGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCA 31551 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||| || || || || || | ||||| || || |||||||| Sbjct 31552 CCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 >seq101 Length=3155651 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 2921955 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 2921896 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 2921895 TATACTAACGAGGAGTGA 2921878 >seq108 Length=2903268 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2761048 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2761107 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 2761108 TACTAACGAGGAATG 2761122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2760939 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2760880 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2760879 TACTAACGAGGA 2760868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1892256 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1892197 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1892196 TACTAACGAGGA 1892185 >seq14 Length=6607037 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2415688 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2415747 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2415748 ATACTAACGAGGA 2415760 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2416271 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2416330 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2416331 ATACTAACGAGGA 2416343 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2416759 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2416700 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2416699 TACTAACGAGGA 2416688 >seq1 Length=14292544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 9557898 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9557957 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9557958 TACTAACGAGGA 9557969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 9558542 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9558601 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9558602 TACTAACGAGGA 9558613 >seq776 Length=96232 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||| | | Sbjct 20435 GGGAATCGAACCCGGGTCTTCCGCGTGACAGGCGGAAATACTAACCACTATACTATCTCG 20376 Query 60136 GAT 60138 ||| Sbjct 20375 GAT 20373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571514758251320