Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1287 104 3e-17 >seq1287 Length=55868 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || ||||| | ||||| || |||||||| | ||| ||||| ||| || || ||||| || Sbjct 30915 GTACCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGA-ATGTTATAGTC 30973 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || || ||||| | || || | ||||||||| ||||||||||||| || || || || Sbjct 30974 GGATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGG 31033 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| |||||||| Sbjct 31034 AGGGATGCCTTCCTTATCTTG 31054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743132619124480