Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq59 282 4e-71 >seq59 Length=4116857 Score = 282 bits (312), Expect = 4e-71 Identities = 313/422 (74%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 125092 GCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCC 125151 ||||| || ||| |||||||||||||||||| || |||||||||| |||| |||||| Sbjct 1749973 GCCCGGCCCCCGCTCACCCATCCGCCGTGCTCCTCCAGCCACTCGCCCCGCTCCTCGGCC 1750032 Query 125152 AGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTAC 125211 ||||||||||||||||| ||||||| |||||| ||||||||||| | |||| | ||| | Sbjct 1750033 AGGTACGCGGCCAGCGCGGCGGCCAGGCGGCTCGGCCCTTCCTCGCGGCCGCTCTCGGCC 1750092 Query 125212 AGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAG 125271 ||||||| ||||||| |||| ||| || | | |||||| || |||||||||| | Sbjct 1750093 AGCGCCGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTGAGG 1750152 Query 125272 CCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTG 125331 |||| ||| | || | | | |||| || ||||| || | ||| || ||| Sbjct 1750153 CCGCCGTCGGCCTCCAGCTGCGCCGCCACCCTCCGCAGCAGCGCCGCCGCCTCCCGCGGC 1750212 Query 125332 CCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCG 125391 | | | ||| | |||||||||||||| |||||||||| ||||| |||||||||||| Sbjct 1750213 TCTGCCCGCGCCAGCGGCGCGCAGGAGCAGAAGAAGGGCCGCTCTCTGCGCTCCAGCTCG 1750272 Query 125392 GCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAG 125451 |||||||| ||||| || | || |||||| || | |||| | Sbjct 1750273 GCCGCCGCCCGCCGCAGCTCGGCCGCCGTGGCGCTGGGCGGCAGCGCGGAGCCGCCGGCG 1750332 Query 125452 CAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATG 125511 | |||||||||||| ||||||||||||| |||||| || |||||||| ||| | | |||| Sbjct 1750333 CGGTGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATG 1750392 Query 125512 GC 125513 || Sbjct 1750393 GC 1750394 Score = 277 bits (306), Expect = 2e-69 Identities = 312/422 (74%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| |||||||||||| Sbjct 1750394 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAC 1750335 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||| | || |||||| || | |||||||| ||||||||||| || Sbjct 1750334 CGCGCCGGCGGCTCCGCGCTGCCGCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 1750275 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||| ||||| |||||||||| |||||||||||||| | ||| | | Sbjct 1750274 GCCGAGCTGGAGCGCAGAGAGCGGCCCTTCTTCTGCTCCTGCGCGCCGCTGGCGCGGGCA 1750215 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || ||||| || |||| | | | || | ||| || Sbjct 1750214 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAGGGTGGCGGCGCAGCTGGAGGCCGACGGC 1750155 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || ||| |||| ||||||| ||||| Sbjct 1750154 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCGGCG 1750095 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | |||| | ||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 1750094 CTGGCCGAGAGCGGCCGCGAGGAAGGGCCGAGCCGCCTGGCCGCCGCGCTGGCCGCGTAC 1750035 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| |||||||||| || |||||||||||||||||| ||| || ||| Sbjct 1750034 CTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGAGCACGGCGGATGGGTGAGCGGGGGCCGG 1749975 Query 157503 GC 157504 || Sbjct 1749974 GC 1749973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508914329788800