Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq30 370 7e-98 seq32 96.9 2e-15 >seq30 Length=5416276 Score = 370 bits (410), Expect = 7e-98 Identities = 741/1093 (68%), Gaps = 4/1093 (0%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| | || |||||| |||| || ||| | || || || | | Sbjct 4399104 ATCAACTGCTCCGGGGTGGTCCGCGGGGACGAGGAGGCGGTGCGGGACGCGCTGCTGGTC 4399045 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACC 107642 |||||||| |||||||| ||| || |||| | || | | ||||| ||||| || Sbjct 4399044 AACCTGGAGGTGAAGAACAAGAGGAAGCCTGTGACCCCCGAGGAGTACCTGAACATGACG 4398985 Query 107643 AGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAA 107702 | ||||| | |||||| || || | | | ||||||| ||||| | || Sbjct 4398984 AAGGACTGCGGCAGCTTCAGGGAGAGCCGGCGCTACGTCGAGTTCCCGCTGAGCGAGGAG 4398925 Query 107703 GAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAA 107762 ||| | ||||||||| |||||||| |||||| |||| | ||||| || | || || Sbjct 4398924 GAGGCCGGCTTCCCCATCGCCTACTCCATGGTGATCCACCACAAGATCGAGATGTTCGAG 4398865 Query 107763 CGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAG 107822 ||||| ||||| |||| || ||||| |||||| | ||||| ||||||||||| | ||| Sbjct 4398864 CGGCTCCTGCGCTCCGTCTACGCCCCGCAGAACGTCTACTGCGTCCACGTGGACGCCAAG 4398805 Query 107823 TCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTC 107882 | || | | ||| | |||| || |||||| ||||||||||||| |||||| Sbjct 4398804 GCTCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTTC 4398745 Query 107883 ATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTG 107942 ||||||| ||| ||||| || ||||| |||||| | |||| || ||||| Sbjct 4398744 GTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCGTGGTCCCGGCTGCAGGCCGACCTC 4398685 Query 107943 AACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGC 108002 ||||| ||| ||| |||| | ||| | ||||| ||| ||| | || || || ||| Sbjct 4398684 AACTGCATGCGGGACCTGCTGCGCAGCCCCGTGCCCTGGCGCTACGTGCTCAACACGTGC 4398625 Query 108003 GGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAG 108062 || || ||||||||||| |||||||| || |||||||||| || || || || || || Sbjct 4398624 GGCACGGACTTCCCCATCAAGACCAACGCGGAGATGGTCCGCGCGCTGCAGGTGCTGCAG 4398565 Query 108063 GGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATAC 108122 || ||||||| |||||||| ||| || | | || ||| | | |||||||| ||| Sbjct 4398564 GGGCAGAACAGCATGGAGTCCGAGAGGCCGACGGCGTACAAGCAGGAGCGCTGGAAGTAC 4398505 Query 108123 CGCTA-TGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGA 108181 | | | ||| || | || | | | || || | |||| ||||| || Sbjct 4398504 CACCACCGAGTGGAGCGGTTCA-TCTCGCGCACGGCCACGGCGAAGCCGCCTCCGCCGCT 4398446 Query 108182 TAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACA 108241 | ||||||||||| || | ||||| | | |||| | || ||||| || | || Sbjct 4398445 CCGCTCGCCCATGTTCACGGGCAGCGCCTACATCGCGGCCACGCGGGCCTTCGTGCGGCA 4398386 Query 108242 TGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCC 108301 || | || |||| | | || | | | || |||| ||| |||||||| ||||| Sbjct 4398385 CGTGCTGGAGGACCCCACGGCGCAGCGGTTCCTCGAGTGGGCCAAGGACACCTACAGCCC 4398326 Query 108302 CGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAG 108361 |||||| ||| | |||||||| || | || || || | |||| ||| | || || Sbjct 4398325 CGACGAGCACGTGTGGGCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCCCA 4398266 Query 108362 CCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTA 108421 | || ||||| || | || ||||||| || | || | || |||||||||||||| Sbjct 4398265 CAACGACAAGTTCCAGCTGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTA 4398206 Query 108422 CCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAG 108481 || || || || ||| || ||||| || | |||||| | || | | | | Sbjct 4398205 CCTGGACGGCGACACGAGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCG 4398146 Query 108482 GGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTT 108541 ||| ||||| | ||||||||||||||| || |||||| || | | | || |||||||| Sbjct 4398145 CGCCGTCTGCGTGTACGGGGCCGGGGACGTGGCCTGGATGCTGCGGCAGCACCACCTCTT 4398086 Query 108542 GGCAAACAAGTTTGAC-CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACC 108600 ||| |||||||| ||| |||| || || || || | | |||||| | || || ||| Sbjct 4398085 GGCCAACAAGTTCGACGCCGA-AGTAGACGACGCCGCCGTCCAGTGCCTCGAGCAGCACC 4398027 Query 108601 TACGTCATAAGGC 108613 | || || ||||| Sbjct 4398026 TGCGGCACAAGGC 4398014 >seq32 Length=5250493 Score = 96.9 bits (106), Expect = 2e-15 Identities = 197/288 (68%), Gaps = 10/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 417543 TTGAGTGGGCAAAAGACACTTACAGCCCTGATGAGTACCTGTGGGCAACGATTCAGAGAA 417484 Query 108334 CTCCGTGGATG--CCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACAT 108388 ||| || ||| || || ||||| || || || |||||| | | || || || Sbjct 417483 -TCCCTG-ATGTCCCGGGTGCTGTTTCTTCTAGTGAC---AAGTATGATGTTTCTGATAT 417429 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 || ||| | |||||| | ||||||||||||||| || |||||||| | || || Sbjct 417428 GAATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGAGATGTGTCTAAAGGTGC 417369 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 ||| || |||| ||| |||| | ||| | | ||||| | | |||| || || Sbjct 417368 GCCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGCGTGTTTGGGGTAGGAGA 417309 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 |||| |||||| || | ||||| ||| |||| || || ||||| || Sbjct 417308 CCTGAGCTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTCGA 417261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348088963677906