Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6222 122 7e-23 seq1 118 8e-22 seq1287 100 2e-16 seq479 84.2 2e-11 >seq6222 Length=16261 Score = 122 bits (134), Expect = 7e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| || ||||| ||||||||||| ||| ||| |||| ||| Sbjct 547 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 488 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| || |||||||| | || || ||||| Sbjct 487 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 428 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | | ||| ||||| | ||| || |||||| Sbjct 427 ATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTG 368 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCTCAA-TACACACAGATGT 45359 || ||||| |||||||||||||| |||||| || || || ||||||||| || Sbjct 367 CCAGTCAGGGTCTTCACAAAGATCTGCATGTTTAACTGAAGAACACACAGAAGT 314 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 775 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 716 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || |||||||| | || || ||||| Sbjct 715 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 656 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | || || |||||| Sbjct 655 ATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTG 596 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||||||||| |||||| Sbjct 595 CCAGTCAGGGTCTTCACAAAGATCTGCATG 566 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| |||| | || ||| Sbjct 1231 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCTTCC 1172 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || |||||||| | || || ||||| Sbjct 1171 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 1112 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || || | ||| || |||||| Sbjct 1111 ATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTG 1052 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||||||||| |||||| Sbjct 1051 CCAGTCAGGGTTTTCACAAAGATCTGCATG 1022 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| |||||| ||| || ||||| |||||||||||| Sbjct 1022 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 963 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || ||||| || || || || || |||| || ||| || || ||||| Sbjct 962 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGG 903 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || ||||| ||||| ||| || | | | | |||| | ||| || Sbjct 902 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 843 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||| |||| || ||||| ||||| |||||| Sbjct 842 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATG 794 >seq1 Length=14292544 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| ||||||||| |||||||||||| ||| ||| | || ||||| || Sbjct 9555977 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 9556036 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || ||||| |||| || ||| || |||||||| | || ||||||||| || || Sbjct 9556037 TTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTG 9556096 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||||||||||| ||| || ||||| || || Sbjct 9556097 GCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTG 9556156 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 9556157 AGGGTCTTCACGAAGATCTGCAT 9556179 Score = 118 bits (130), Expect = 8e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| ||| ||||||||| |||||||||||| ||| ||| | || ||||| || Sbjct 9556433 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 9556492 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| || ||| || ||||| || | || ||||||||| || || Sbjct 9556493 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTG 9556552 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| || Sbjct 9556553 GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTG 9556612 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTGC 45341 || |||||||| ||||| |||||||||| Sbjct 9556613 AGGGTCTTCACGAAGATCTGCATGTTGC 9556640 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 9556199 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 9556258 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | || ||||||||| Sbjct 9556259 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGG 9556318 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| || || ||||| Sbjct 9556319 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGAGTGATGGTCTTA 9556378 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 9556379 CCTGTCAAGGTCTTCACGAAGATCTGCATG 9556408 >seq1287 Length=55868 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TC 45183 |||||||| || || |||||||||||||||||||| | | ||| || || Sbjct 31620 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC----GATAGCGTTCTGCCATC 31675 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 ||||| || || || ||||||||||| ||||| || || || || | ||||| ||||| Sbjct 31676 TTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTC 31735 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | |||||| ||| || | | | ||||| ||||||||||| || || || Sbjct 31736 CTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGT 31795 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| || || || || ||||| ||||| ||||| || Sbjct 31796 CTTCCCGGTTAGCGTTTTCACGAAGATCTGCATTTT 31831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| |||||||| ||| | | || ||||| || || || ||||| Sbjct 31410 TCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAA 31469 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||| || ||||| || || | || ||||||||| |||||| ||| || | Sbjct 31470 ATAAGCCGTTGCTGGTCTGGCGGAATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTC 31529 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| |||||||||| || |||||||| || |||| ||||||||| Sbjct 31530 TCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACG 31589 Query 45326 AAGATTTGCATG 45337 || ||||||||| Sbjct 31590 AAAATTTGCATG 31601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 8/139 (6%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | ||||| | ||| | ||| ||||| ||||||||||||||||||||| Sbjct 31146 CCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCC--- 31202 Query 45170 AGTTGGCGATCGTC-GTCC---AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 | | ||| || || |||| || |||||||| || || ||||| ||||||||||| || Sbjct 31203 -GATAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGG 31261 Query 45226 AGGCACACCCTCCTTGTCC 45244 ||| | ||||| |||||| Sbjct 31262 AGGAATTCCCTCTTTGTCC 31280 >seq479 Length=216575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || | |||| |||||||| || || ||||| Sbjct 29642 TCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCCAGTTGCTTCCCTGCGAAA 29701 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||||||||||||||| | ||||||||||| |||||| ||| || Sbjct 29702 ATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTTACATTT 29761 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | || || || | ||| || ||||| || || || ||||| || Sbjct 29762 TCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACG 29821 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 29822 AAGATCTGCAT 29832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394871194154749