Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1099 145 7e-30 seq1287 127 2e-24 seq715 116 3e-21 seq479 113 4e-20 seq1 113 4e-20 seq214 111 1e-19 seq6222 105 6e-18 >seq1099 Length=64186 Score = 145 bits (160), Expect = 7e-30 Identities = 182/246 (74%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 |||| ||||| || || || ||||| ||| ||| ||||| |||||||| ||||||| || Sbjct 43509 CAAG-TTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACATAAAT 43567 Query 23091 TGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 |||||| || || ||||||| || | ||||||||||||| |||||| | |||||||| Sbjct 43568 TGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATCCTTGT 43627 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGT-C 23209 | | |||||||||||| || ||||||| ||| | | | || || ||||| ||| Sbjct 43628 ACAACATGTACGGCGTCCCTGTCTCGATCTGAGCTTGTAAAATGGCGAACCACA-AGTGT 43686 Query 23210 TGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 || ||| ||| | | | | ||| ||||||| ||||| | | ||||| ||| | | Sbjct 43687 TGGGCGGGAATAGTTTTCCTGCCCCTCCCTTCTTTTTCGTATGTCTCGTACAGCGCTTTA 43746 Query 23270 AATTCG 23275 |||||| Sbjct 43747 AATTCG 43752 >seq1287 Length=55868 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| |||||| ||||||| || ||||| || | || || |||||||| Sbjct 31601 CATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTC 31542 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| ||||||||||||| | ||||| ||||| Sbjct 31541 AGACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCA 31482 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || ||||| || || ||| ||||||| | || | || || || Sbjct 31481 GCAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAA 31422 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| ||| | |||||||| || Sbjct 31421 TATTCAGAAGGAATCAACTTTGCATCTGGTGCT 31389 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| | || ||||| || || || | || || || || || Sbjct 31144 ATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATCT 31085 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || || ||| || ||||||||| | || || ||||| Sbjct 31084 GATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCAA 31025 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || || || ||||| | || ||| | || | ||| |||||| Sbjct 31024 CAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAAC 30965 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||| ||| |||| | ||||| | || |||| Sbjct 30964 ATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACTACGTGGTGGTA 30916 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||||| ||||| ||||| | || || ||||| || Sbjct 31372 ATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATCA 31313 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | || ||| || || || |||||| || || | || || ||||| Sbjct 31312 GACTCCATAGAGAATGTGAAAGCAAAG-ATCCAGGACAAAGAGGGAATTCCTCCAGACCA 31254 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || || || |||||| | || ||| | || | || || || Sbjct 31253 ACAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAA 31194 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || ||||| || || || |||||| || || |||| || Sbjct 31193 CATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGG 31146 >seq715 Length=106915 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 || ||| ||||| |||||||||||||||||||||||| || |||| || | || || Sbjct 92504 GACCGACGCAAGGTTGCATACGGCCACCTCGTCTTTGCTAGTAAACTCGACCACCTCAGT 92563 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || | |||| |||||||||||| |||||||| | || ||||| || |||||| | Sbjct 92564 GCACAAGTTGCCACACTTTATCGTCCCCAAATTCTTTTGATTGCTCTTCTTATTGCAAGC 92623 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || ||||| | ||||||||| ||||| || || | ||| Sbjct 92624 GTCTTTGTACATCATGTACGGAGTGCCTGTTTCTATCTG 92662 >seq479 Length=216575 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || |||||| | || |||||| | ||| Sbjct 29832 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTCC 29773 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| |||||||| || | || |||||||| Sbjct 29772 GACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCAA 29713 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || |||||||| | |||| | || || ||| Sbjct 29712 CAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAAC 29653 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || || || ||||| || |||||||||||| Sbjct 29652 ATCCAGAAGGAATCTACCCTTCATCTGGTA 29623 >seq1 Length=14292544 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 9556638 AACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 9556579 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | ||||| | || ||||||||||||| | || ||||| Sbjct 9556578 AGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGAT 9556519 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| | | | || || ||| || Sbjct 9556518 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACTA 9556460 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || ||||| || || | |||||||| || Sbjct 9556459 CAACATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGAGG 9556409 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || || || Sbjct 9556179 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGT 9556120 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || ||||| ||| Sbjct 9556119 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 9556060 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| || || ||| || ||| Sbjct 9556059 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 9556000 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || ||||| || || | |||||||| |||| Sbjct 9555999 ATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGCCTGAGGGGTGGTA 9555951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||||| || || ||||| | || || || || Sbjct 9556408 CATGCAGATCTTCGTGAAGACCTTGACAGGTAAGACCATCACTCTGGAGGTCGAGCCCAG 9556349 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || || || Sbjct 9556348 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCA 9556289 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || || ||| || || Sbjct 9556288 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 9556229 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | |||||||| || Sbjct 9556228 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 9556181 >seq214 Length=1293776 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| | ||||||| ||||| || ||||| ||||| |||| || || | ||| | Sbjct 78100 TTTCAACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCAC 78041 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || |||||| || || |||||||| || || |||| ||| || || | |||| |||| Sbjct 78040 GCTGCTCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCAAAGATGTCCAGGTGCC 77981 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || || |||| || Sbjct 77980 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGCCTCTGAT 77942 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| || ||||| || || || || || |||||||| || || || || Sbjct 79383 ACCTCGTCTTTGCTGGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTC 79324 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||| ||||| || | ||||| || || ||||| |||||||| |||||| Sbjct 79323 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTG 79264 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||| || Sbjct 79263 CCAGTCTCCGTCTGCGACTCGATGATGGC 79235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 22697 CCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCG 22756 || ||||||||||| ||||| || | | | ||||| || ||||| || ||||| || Sbjct 80869 CCCTCGTACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCA 80810 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 |||||||| || ||||| || || | || ||||| ||| || ||||||| | Sbjct 80809 CCGTAATAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCG-AA 80751 Query 22817 GGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 || ||| | ||| | | ||| ||||| |||| ||||| ||||| || ||||| || || Sbjct 80750 GGGATACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGGGCG 80691 Query 22876 GT 22877 || Sbjct 80690 GT 80689 >seq6222 Length=16261 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 335 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 394 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || | || ||||| |||||| | || ||||| Sbjct 395 TAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGA 454 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||||||||| ||| |||||||| || || || || Sbjct 455 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 514 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || || || ||||| || | |||||||| || Sbjct 515 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGG 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445530316542480