Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3126 120 3e-22 seq45 111 1e-19 >seq3126 Length=28506 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||||||||| || | ||| ||||| || |||| ||| || Sbjct 15059 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 15000 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| || ||||||||||| || || ||||| |||||||||||| Sbjct 14999 AGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATGCT 14940 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 14939 ACCACACGTTCTCC 14926 >seq45 Length=4641476 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || ||||| ||||||| || | || || Sbjct 476400 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 476459 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||||||||||||||||||||| |||||||| || || || || || ||||| || Sbjct 476460 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCG 476519 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 476520 ACCACTCTCTCACC 476533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468276663409360