Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value SEQ32282 118 1e-21 seq137 118 1e-21 seq45 114 2e-20 seq3126 105 9e-18 seq214 100 4e-16 >SEQ32282 Length=1267 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| || | |||| | ||| ||| | | ||||||||||||||| || Sbjct 530 TTACTTTTTATTAAATGCCTCCAGTAAACGTAGCAGGTTGAGGAACAGATTGATGATGTC 589 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| |||||| | || | | || |||||||| || | ||| || || || Sbjct 590 CAGGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAACTTGTGCATCAGCAC 649 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||| Sbjct 650 GTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGTGCTCCAGCAGCAGCAAACACCAG 709 Query 9407 CTCCACTGTTTCACT 9421 ||||| | ||||||| Sbjct 710 CTCCAATATTTCACT 724 >seq137 Length=2337947 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| || | |||| | ||| ||| | | ||||||||||||||| || Sbjct 1819187 TTACTTTTTATTAAATGCCTCCAGTAAACGTAGCAGGTTGAGGAACAGATTGATGATGTC 1819246 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| |||||| | || | | || |||||||| || | ||| || || || Sbjct 1819247 CAGGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGACAACTTGTGCATCAGCAC 1819306 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||| Sbjct 1819307 GTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGTGCTCCAGCAGCAGCAAACACCAG 1819366 Query 9407 CTCCACTGTTTCACT 9421 ||||| | ||||||| Sbjct 1819367 CTCCAATATTTCACT 1819381 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||| | ||||| ||||| Sbjct 1820795 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACACGGTCAGTCCAAGA 1820854 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| || | ||||||||||||| Sbjct 1820855 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACAATGGACACATCATAGAAA 1820908 >seq45 Length=4641476 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 476398 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 476457 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 476458 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 476517 Query 36300 CAATAAGTCTCTCTCC 36315 | | | |||||| || Sbjct 476518 CGACCACTCTCTCACC 476533 >seq3126 Length=28506 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| ||| | || | Sbjct 15061 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 15002 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 15001 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 14942 Query 36300 C 36300 | Sbjct 14941 C 14941 >seq214 Length=1293776 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 84167 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 84108 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 84107 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 84048 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA 65053 | || | || ||||| | || ||||| Sbjct 84047 TCTGGGAGATCTCCCACACCGTCTTATA 84020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 |||| ||||||||||||||||||||||| ||||| | || | ||||||| | || Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCAAAGATGTCCAGGTGCCACGG 77977 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||| ||| ||||| | | | ||||||| Sbjct 77976 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 77948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || || |||||||||| |||||| || ||||| || || || || ||||||||| Sbjct 80863 TACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCACCGTAA 80804 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 || ||||| || || |||| || || || || || || |||| || || ||||| Sbjct 80803 TAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCGAAGGGATAC 80744 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 | | ||| || || ||||| || | || || || || || ||||| || Sbjct 80743 CTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 80694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657824223457960