Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq33 86.0 5e-12 >seq33 Length=5235935 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||| || ||||| || || |||| || || || || | |||||||| || || || | Sbjct 584714 TCAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAG 584773 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC---CC 21105 | || || || ||||| || | |||||||||||||| ||||| ||||| || || | Sbjct 584774 GCACTCCTAGTCCCATATCTCCAGACCTCTGGTACAGTTGGCAAGACAGTTCACCATTCA 584833 Query 21106 GAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || || ||||| || | | | || ||||| || | ||||||| Sbjct 584834 GA---ACATAGAACTGGCAGAGAGCATGGCAAGGTGGCAAAGCCATC 584877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427555108371120