Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6222 127 2e-24 seq1 111 2e-19 seq1287 98.7 1e-15 >seq6222 Length=16261 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||||| || | ||| | || || ||||| || ||||| || ||| Sbjct 1022 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 963 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || |||||| ||||||| | |||||||| ||||| Sbjct 962 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGG 903 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| || | | || | ||||| ||||||| || Sbjct 902 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 843 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 842 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || ||||| || || ||||| || || || |||| | Sbjct 782 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 723 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| || |||||| ||||||| | |||||||||||||| ||||||||||| Sbjct 722 GTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 663 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || |||| | ||| | ||||| ||||||| ||||| | || | Sbjct 662 GTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGAT 603 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 602 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || ||||| || || ||||| || ||| || |||| Sbjct 1238 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACC 1179 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || |||||| ||||||| | |||||||||||||| ||||||||||| Sbjct 1178 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 1119 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | ||| | ||||| ||||||| || |||| ||| | Sbjct 1118 GTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGAT 1059 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| ||||| || || || ||||| Sbjct 1058 GGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || || ||||| || ||||| || || || |||| | Sbjct 554 ACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 495 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| || ||||| ||||||| | |||||||||||||| ||||||||||| Sbjct 494 GTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 435 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | |||||| | ||||| ||||||| ||| | Sbjct 434 GTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGAT 375 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 374 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 339 >seq1 Length=14292544 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||| || |||| || | ||||| ||||| || || Sbjct 9556439 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 9556497 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| ||||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 9556498 AGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 9556557 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| ||||||| ||||| | ||| | ||||||||||| | || Sbjct 9556558 GACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 9556617 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9556618 CTTCACGAAGATCTGCAT 9556635 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| | ||||| ||||| || ||| Sbjct 9555983 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 9556042 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | ||||| | |||||||||||||| |||||||| ||||| ||| || || Sbjct 9556043 GCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 9556102 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || || | || Sbjct 9556103 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTC 9556162 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9556163 TTCACGAAGATCTGCAT 9556179 >seq1287 Length=55868 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| | ||| || || || | || || || |||||||||||||| ||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||| ||||| || ||| | |||| || || || || ||||| Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| |||| | || | | ||| | || || | ||||| || Sbjct 31038 ATGCCTTCCTTATC-TTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTAC 31096 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| || || || ||||| |||||||| Sbjct 31097 CTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || | || || | ||| ||||||| ||||| || || |||||||| || || Sbjct 31601 GCCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 31660 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| ||||| || || || | |||| || |||||||| || || Sbjct 31661 TAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGG 31720 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 || || |||||||| ||| |||| | || | |||| || | ||||| | |||||| Sbjct 31721 GATTCCCTCTTTGTCC-TGAATTTTCGCCTTCAC-GTTCTCAATCGTGTCCGACGGCTCC 31778 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | ||||| ||||| | |||||| ||||| || ||||| Sbjct 31779 ACCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCAT 31828 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || || || | || | ||| | ||| ||||| || |||||||| || || Sbjct 31146 CCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAT 31205 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||||||||| || ||| | |||| ||| || || || ||||| Sbjct 31206 AGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGA 31265 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| ||| ||| | | || | | ||| | || || || Sbjct 31266 ATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACT 31325 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || |||||||| || ||||| |||||||| Sbjct 31326 TCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCAT 31372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495801278304800