Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq45 129 8e-25 seq3126 116 5e-21 seq214 105 1e-17 >seq45 Length=4641476 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 476398 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 476457 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 476458 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 476517 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 476518 CGACCACTCTCTCACC 476533 >seq3126 Length=28506 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| ||| | || | Sbjct 15061 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 15002 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct 15001 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 14942 Query 50102 CAAC 50105 | || Sbjct 14941 CTAC 14938 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| || || || || | |||||| |||||||| || || |||||||| ||||| Sbjct 13466 ATCTTTAATGTACGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 13407 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || || |||||||| | ||||| || |||||||||||| Sbjct 13406 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTGATCTGCACTTCT 13361 >seq214 Length=1293776 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 84167 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 84108 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 84107 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 84048 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA 78932 | || | || ||||| | || ||||| Sbjct 84047 TCTGGGAGATCTCCCACACCGTCTTATA 84020 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | ||| Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCAAAGATGTCCAGGTGCCACGG 77977 Query 80058 TTCCAAGTATATGGC 80072 |||| ||| ||||| Sbjct 77976 CTCCAGGTAGATGGC 77962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717888395865160