Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq45 129 8e-25 seq3126 114 2e-20 seq214 95.1 2e-14 >seq45 Length=4641476 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 476398 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 476457 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 476458 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 476517 Query 42207 CAATAAGTCTCTCTCC 42222 | | | |||||| || Sbjct 476518 CGACCACTCTCTCACC 476533 >seq3126 Length=28506 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| |||||||| ||||||| ||| | || | Sbjct 15061 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 15002 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||| | Sbjct 15001 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 14942 Query 42207 C 42207 | Sbjct 14941 C 14941 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||| ||||||||||| || |||||||| ||||| Sbjct 13466 ATCTTTAATGTACGTGTCAATGAGAAGACTGTACATTTCTGAGTGTATGTTTTCCATGGC 13407 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | ||||| || | ||| |||||| Sbjct 13406 AATCTGGAAGCCATAGAAACAACGCGCCTCTGTGATCTGCACTTCT 13361 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 16312 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 16253 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 16252 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 16218 >seq214 Length=1293776 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | ||| Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCAAAGATGTCCAGGTGCCACGG 77977 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCC 72169 |||| ||| ||||| | | | || |||| Sbjct 77976 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 77948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| |||| | || || || ||||| || | Sbjct 84167 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 84108 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | || || || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 84107 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 84048 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || | || ||||| | || ||||| Sbjct 84047 TCTGGGAGATCTCCCACACCGTCTTATA 84020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670783756290440