Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6222 118 1e-21 seq1287 107 2e-18 seq1 86.0 6e-12 >seq6222 Length=16261 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||||| || | || | || |||||||| || |||||||| ||| Sbjct 1022 GCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 963 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| ||||||| | |||||||| ||||| Sbjct 962 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGG 903 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||| || | | || | ||||| |||| || || Sbjct 902 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGAC 843 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||||| ||||| ||||| ||||| || ||||| Sbjct 842 CTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 || |||||| | | ||||| || | || | || || || || || |||||||| || Sbjct 1253 ATTGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 1194 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | || |||| ||||| || || || |||||| ||||||| | ||||||||||| Sbjct 1193 GGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 1134 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTC 143133 ||| |||||||||||||| || || || | | ||| | ||||| |||| || Sbjct 1133 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTC 1074 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| || | |||||||| |||| ||||| || || || ||||| Sbjct 1073 AACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | || | || || || || || |||||||| || Sbjct 794 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 735 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | |||||| || || || |||||| ||||||| | |||||||||||||| Sbjct 734 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 675 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || |||| | ||| | ||||| |||| || || Sbjct 674 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGAC 615 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || || || || ||||| Sbjct 614 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | || | || |||||||| || |||||||| || Sbjct 566 GCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 507 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| | |||||| || || || ||||| ||||||| | |||||||||||||| Sbjct 506 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGG 447 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 446 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGAC 387 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| |||| || || || || || ||||| Sbjct 386 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 339 >seq1287 Length=55868 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| | ||| || ||||| | || ||||| ||||| ||||| || ||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| ||||||||||| || ||| | |||| || || || || ||||| Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || |||||| || | | ||| | ||| || | || ||||| Sbjct 31038 ATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACC 31097 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| || || || ||||| |||||||| Sbjct 31098 TCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 >seq1 Length=14292544 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | |||| || | ||| | || || || || || |||||||| ||| Sbjct 9556408 GCCTCCCCTCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 9556467 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || |||| || | ||||| || || || |||||| ||||||| | ||||||||||| | Sbjct 9556468 CAGGGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 9556526 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||| ||||| || || || | | || | ||||| |||| || | Sbjct 9556527 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGA 9556586 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | ||||||||||| | || || ||||| || ||||| Sbjct 9556587 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 9556635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506745878836080