Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6222 113 3e-20 seq1287 104 2e-17 >seq6222 Length=16261 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||| || || | | | ||||||| | || Sbjct 541 TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 482 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 481 TTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 422 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | |||||||| |||||| || || || | ||| ||||| || || ||| Sbjct 421 GCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 362 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 361 AGGGTCTTCACAAAGATCTGCATGTTT 335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || || | | | ||||||| | || Sbjct 769 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGC 710 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 709 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 650 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| ||||| || || || || || | || ||||| || || ||| Sbjct 649 GCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTC 590 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 589 AGGGTCTTCACAAAGATCTGCAT 567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| ||| || | | | ||||| | || Sbjct 1225 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCTTCCAGCTGC 1166 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| | || || ||| ||||| ||||||||||| || ||| Sbjct 1165 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTG 1106 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || |||| ||||| || || || || || | ||| ||||| || || ||| Sbjct 1105 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTC 1046 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 1045 AGGGTTTTCACAAAGATCTGCAT 1023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | || |||||||| ||||| || |||||||| ||| Sbjct 1023 TGCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 964 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| | || |||||||| | |||| | || || || | Sbjct 963 ACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAG 904 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| |||||| ||| ||| | |||||||| || || || | Sbjct 903 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGA 844 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || || || || || |||| ||||| || || || ||||| Sbjct 843 CCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 >seq1287 Length=55868 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || ||||| || || || || ||||| ||||| || ||| | Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| |||| || | |||||| || || | ||||| || |||||||| || Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||||| ||| ||| ||||||| ||||| ||||| Sbjct 31038 ATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACC 31097 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || || || || | ||| || || ||||||||||| Sbjct 31098 TCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || |||||||| || ||| |||| |||| || | ||| Sbjct 31170 TGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTCCTCGAGCTGT 31229 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || || | |||||||| |||||||| |||||||| |||||||| || ||| Sbjct 31230 TTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTCCTGGATCTTT 31289 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | ||||||| || |||||| |||| || |||||||| ||||| Sbjct 31290 GCT-TTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGTTTTCCCTGT 31348 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 31349 CAACGTCTTCACGAAAATTTGCAT 31372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361992180734229