Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1287 84.2 1e-11 >seq1287 Length=55868 Score = 84.2 bits (92), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 ||||||| ||||| |||||| || || || || || |||||||| || || | || Sbjct 31383 AACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGATAG--TGTTC 31440 Query 33212 TGG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269 || || |||| ||||| || || || | ||||||||||| | || ||||||| Sbjct 31441 TGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGAATGCCTT 31500 Query 33270 CTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCA 33326 | || || ||| ||||| | || | | |||||||| |||| || |||| Sbjct 31501 CCTTGTCCTGAATTTTCGCCT---TCACATTCTCGATCGTGTCTGACGGTTCCACCTCCA 31557 Query 33327 GAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || || || | ||| || ||||||||||||||| Sbjct 31558 ACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCATG 31601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318612992113362