Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1287 111 1e-19 >seq1287 Length=55868 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| ||||||||||| || || || |||||||| ||||| ||| || || || Sbjct 30929 TCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGATAG----CGTTC 30984 Query 43966 ATC-GTCC---AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTT 44021 || |||| | ||||||||| ||||| ||||| || || ||||| |||| | |||| Sbjct 30985 TTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTT 31044 Query 44022 CTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCG 44081 | |||||| |||||| || || | | | ||||| | ||||| || || | | Sbjct 31045 CCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAG 31104 Query 44082 TAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||||||||||||||| || |||||||| Sbjct 31105 TAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCAT 31144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354594402714612