Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1287 87.8 2e-12 seq6222 82.4 6e-11 >seq1287 Length=55868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| |||||||||||||| || || ||||| ||||| ||||| || ||| Sbjct 30918 CCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAT 30977 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | || || | |||||| |||||| |||| | | |||||| || || Sbjct 30978 AGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGGG 31037 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || |||||| ||||| | | | | ||| || || Sbjct 31038 ATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTACC 31097 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| || |||||||| || || || || |||||||||||| Sbjct 31098 TCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 >seq6222 Length=16261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||| || || || || || || || |||||||| ||| || || | ||| Sbjct 1235 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATC 1176 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || ||||| ||| | || |||||||| |||||| || | |||||||||||| Sbjct 1175 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 1116 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||||| | ||| | || | || || ||| | ||| ||||| Sbjct 1115 TTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGT 1056 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||| ||||| ||||| || ||||| Sbjct 1055 CTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419370536839689