Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq236 178 3e-39 seq6222 172 1e-37 seq1287 168 2e-36 seq479 163 7e-35 seq1 140 7e-28 seq45 113 1e-19 seq3126 98.7 2e-15 seq647 84.2 5e-11 >seq236 Length=1091096 Score = 178 bits (196), Expect = 3e-39 Identities = 137/163 (84%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||||||||| | ||||||||| Sbjct 77667 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 77726 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || |||||||||||||| || || ||||| ||||| || ||||| Sbjct 77727 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCACGTCTATCACCATTTCACCATGTTC 77786 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 77787 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 77829 >seq6222 Length=16261 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||||||||| || || |||||| Sbjct 568 ATGCCTCCCCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 509 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||| || || |||||||| ||||| ||| Sbjct 508 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGA 449 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || ||||| |||| ||| |||||||| || Sbjct 448 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCG 389 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 388 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 336 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||||||||| || || ||||| Sbjct 1024 ATGCCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCG 965 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| ||||| ||| Sbjct 964 GACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGA 905 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || || ||||| |||| ||| || || || || Sbjct 904 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCG 845 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | ||||| || || |||||||| Sbjct 844 ACCTCAAGAGTGATTGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 >seq1287 Length=55868 Score = 168 bits (186), Expect = 2e-36 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| |||||||| ||||| ||||| ||||| || ||||||||||| Sbjct 30948 GTTGATTCCTTTTGAATGTTATAGTCGGATAGCGTTCTTCCGTCCTCGAGTTGTTTTCCC 31007 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | |||||| |||||||| || ||||| ||||| ||||| || || || Sbjct 31008 GCAAAAATCAATCGCTGTTGGTCAGGAGGGATGCCTTCCTTATCTTGAATTTTCGCCTTC 31067 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||||| || |||||||| || ||||||||||| || || | || Sbjct 31068 ACATTTTCTATCGTATCAGATGGCTCTACCTCCAGAGTAATAGTCTTGCCGGTTAAAGTC 31127 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 31128 TTCACGAAAATTTGCATT 31145 Score = 156 bits (172), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| || || | || || || |||||||| || ||||| ||||| ||||| ||||| Sbjct 31160 AAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTTCCGTC 31219 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || |||||||| |||||||| | | |||||| || ||||| ||||| ||||| || Sbjct 31220 CTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGAATTCCCTCTTTGTC 31279 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||||||||| ||||| |||| || || |||||||| ||||| || || || Sbjct 31280 CTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTACTTCTAGCGTGATGGT 31339 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || || || || |||||| Sbjct 31340 TTTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || ||||| | || || | || | |||||||| |||||||| || ||||| Sbjct 31599 ATGCCACCCCTTAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCC 31658 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| || ||||| || || || || || || || | | ||| |||||||| Sbjct 31659 GATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAATATCAAGCGCTGCTGATCAGGG 31718 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| |||||||| || || || || || || | || || || || Sbjct 31719 GGGATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTTCTCAATCGTGTCCGACGGCTCC 31778 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || |||||||| || || || ||||| || || ||||||||||| Sbjct 31779 ACCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCACGAAGATCTGCATTTT 31831 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | | || || || ||||| || || ||||| ||||||||||| ||||| Sbjct 31371 ATTCCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCC 31430 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| || ||||| || || || || || ||||| |||| || || || || Sbjct 31431 GATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGC 31490 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||||||| || || || ||||| || | || || ||||| Sbjct 31491 GGAATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCC 31550 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || || | || || || || || ||||| Sbjct 31551 ACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 >seq479 Length=216575 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | |||||||| ||||| || || |||||||| ||||| || |||||||| Sbjct 29623 TACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTC 29682 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || || || ||||| ||||||||||| || ||||| ||||| || || || || Sbjct 29683 CAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTG 29742 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || || ||||||||||| | || ||| || ||| || || || || || ||||| Sbjct 29743 AATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTT 29802 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || |||||||| Sbjct 29803 CCCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq1 Length=14292544 Score = 140 bits (154), Expect = 7e-28 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 104321 ACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 |||| | ||| |||||| || | || || ||||| | || || || ||||| || Sbjct 9555943 ACTTCAGTTACCACCCCTC--AGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATG 9556000 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| || || || | || ||||| || || || ||||| ||||| |||||||| Sbjct 9556001 TTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGC 9556060 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| ||||| || ||||| || ||||| ||||| || || || || || | ||| || Sbjct 9556061 TGATCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCA 9556120 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| | || || ||||||||||| || || || || || |||||||| Sbjct 9556121 CTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 9556178 ATCCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 9556237 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| ||||| || Sbjct 9556238 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGG 9556297 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 9556298 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCG 9556357 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || |||||||| || | || || || || |||||||| Sbjct 9556358 ACCTCCAGAGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 >seq45 Length=4641476 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 476521 GTCGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGG 476462 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 476461 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 476402 Query 269258 GA 269259 || Sbjct 476401 GA 476400 >seq3126 Length=28506 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || || ||||| || || ||||| || |||||||| || |||||||| Sbjct 14926 GGAGAACGTGTGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCA 14985 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| |||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 14986 TCAATTTTCTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAACTC 15045 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 15046 ATCAGTAGAGATGA 15059 >seq647 Length=124777 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 268874 AGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTCC 268932 |||||||| ||||| |||||||| | |||||| || | | | ||||| |||||||| Sbjct 6286 AGTGATGGCATCGTACTAGAAAATCTCGCAGAGAAATT-TCTGAGCGAGGTGCAGATTCC 6344 Query 268933 TGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTA 268992 ||||| | || ||||| |||||||| || || ||||||||||| || || ||||| Sbjct 6345 CGAAGCTCGTGCCTTCTACGGCTTCCAGATTGCAATGGAAAATATTCACTCTGAAATGTA 6404 Query 268993 CAG 268995 ||| Sbjct 6405 CAG 6407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150773360140252