Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 8e-14 seq76 84.2 1e-11 >seq14 Length=6607037 Score = 91.5 bits (100), Expect = 8e-14 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | ||| |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 929307 AAAAGTGAAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 929366 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||||||||||||| |||||| Sbjct 929367 CTCTAACCAACTGAGCTAACCGGCCGT 929393 Score = 86.0 bits (94), Expect = 3e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 2417909 AAAAGCAAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 2417968 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 2417969 TCTAACCAACTGAGCTAACCGGCC 2417992 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1163428 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1163487 Query 11528 CC 11529 || Sbjct 1163488 CC 1163489 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2416034 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2416093 Query 11528 CC 11529 || Sbjct 2416094 CC 2416095 Score = 82.4 bits (90), Expect = 4e-11 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAA-AAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || ||| || ||| || |||| ||| | |||||| | |||||||||| ||||||| Sbjct 2417060 AAAATAAAAATAAAAATAAAACCAAGAAGTGGCCCGTACGGGGATCGAACCCGCGACCTT 2417119 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| |||| ||||||||| |||| Sbjct 2417120 GGCGTTATTAGCACCACGCTCTAACCAGCTGAGCTAACCGGCC 2417162 >seq76 Length=3695371 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 3051620 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 3051561 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3051560 CTGAGCTAACCGGCC 3051546 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261356173217044