Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq278 140 5e-28 seq123 140 5e-28 >seq278 Length=756766 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || ||||| || || || || ||| ||| |||||||| ||| |||||| Sbjct 339277 ATGAGTCTTGTAGTCTGGAATAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAAG 339218 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||| |||||||| || ||||| || || || |||||||| || || || Sbjct 339217 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATTGTTGCATACATCATTAGGCCCGGG 339158 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | |||||| Sbjct 339157 ACCAAGCCAAACACCTCCTGGCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGA 339098 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | | || ||| || || | || ||||||||||| || ||||| ||| Sbjct 339097 TAGATCATCTCCGCTTGAGTATCCTTCACTGTCGGTGGATACATTTCTCCATCAATCATC 339038 Query 9862 TG 9863 || Sbjct 339037 TG 339036 >seq123 Length=2623908 Score = 140 bits (154), Expect = 5e-28 Identities = 209/297 (70%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| || |||||||| || |||||| || || || || | | || Sbjct 1915395 GGAACGCCGCGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGCGACGCTG 1915336 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| | || || ||||||| ||||| ||||| |||||||| |||||| Sbjct 1915335 TCTTCACGATCTCGAAGCCGGTCGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGGG 1915276 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 1915275 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGGGAAAACGGAGCGCCAATCTCCACCATGC 1915216 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || ||||| ||| ||| ||| |||| || || | || || || | || ||||||| Sbjct 1915215 TTTCCCCGAAAATGCCGTCGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 1915156 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || |||||||| || || || || || || || | |||| ||||||| Sbjct 1915155 GAGCGTCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 1915099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708149556409360