Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9053 131 3e-26 seq8754 131 3e-26 seq146 131 3e-26 seq3947 107 3e-19 SEQ20044 93.3 7e-15 seq7038 93.3 7e-15 SEQ30614 80.6 4e-11 SEQ21147 80.6 4e-11 >seq9053 Length=11739 Score = 131 bits (144), Expect = 3e-26 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 8394 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8335 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 8334 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8275 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 8274 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 8215 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 8214 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 8155 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || | | || || || || ||||| |||||| Sbjct 8154 ACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 8119 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 3352 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 3411 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3412 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 3471 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 3472 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 3531 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 3532 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 3591 Query 16672 CCG 16674 || Sbjct 3592 ACG 3594 Score = 80.6 bits (88), Expect = 4e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9020 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8961 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 8960 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8901 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | || | ||| ||||||| Sbjct 8900 GCGCGGCGTGCTCAAGGTCTTCCT 8877 >seq8754 Length=12054 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| |||||| Sbjct 7605 GCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCTATC 7546 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 7545 CGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 7486 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| |||||||| ||| ||| |||| || || || ||| |||||| Sbjct 7485 CGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 7426 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 7425 CACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGA 7366 Query 16673 CG 16674 || Sbjct 7365 CG 7364 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 408 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 467 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 468 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 528 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 587 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 588 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 647 Query 16672 CCG 16674 || Sbjct 648 ACG 650 >seq146 Length=2083326 Score = 131 bits (144), Expect = 3e-26 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9008 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8949 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 8948 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8889 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 8888 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 8829 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 8828 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 8769 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || | | || || || || ||||| |||||| Sbjct 8768 ACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 8733 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 7346 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 7405 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 7406 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 7465 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 7466 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 7525 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 7526 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 7585 Query 16672 CCG 16674 || Sbjct 7586 ACG 7588 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 26287 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 26346 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 26347 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 26406 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 26407 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 26466 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 26467 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 26526 Query 16672 CCG 16674 || Sbjct 26527 ACG 26529 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 30716 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 30657 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 30656 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 30597 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||||||| ||| ||| |||| || || || ||| ||||| Sbjct 30596 GCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 30537 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 30536 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 30477 Query 16672 CCG 16674 || Sbjct 30476 ACG 30474 >seq3947 Length=23597 Score = 107 bits (118), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| |||||||| |||||| | |||| ||||||||||| Sbjct 7178 CGCGATAACATCCAGGGCATCACGAAGCCAGCAATCCGTAGGTTGGCGCGTCGTGGTGGT 7119 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| | | || || ||| | || ||||| ||||||| || |||| | ||||| Sbjct 7118 GTCAAAAGAATTTCGGGTTTGATTTACGAAGAAATTCGTGGCGTCCTGAAAGTGTTCCTT 7059 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT---AAGACTGTC 16633 ||| | | ||| | || || | || || || ||||| |||| ||||| || Sbjct 7058 GAGAACATCATCAAGGACTCTGTGACATACACGGAACACGC---ACGTAGAAAGACCGTG 7002 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| || ||||| | |||| || |||||| Sbjct 7001 ACGGCCATGGACATTGTCTACTCCCTGAAGCGCCAAGGC 6963 >SEQ20044 Length=4216 Score = 93.3 bits (102), Expect = 7e-15 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| || ||||| || || || || |||||||| |||| || | |||| || ||| Sbjct 1 ATCCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAG 60 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| |||||||| ||| ||| |||| || || || ||| ||| Sbjct 61 ACGCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACC 120 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| ||||| ||||||| | ||||| || | || || || Sbjct 121 GAGCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAG 180 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || || | | || || || || ||||| |||||| Sbjct 181 GGACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 218 >seq7038 Length=14728 Score = 93.3 bits (102), Expect = 7e-15 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 16490 ATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||||| || ||||| || || || || |||||||| |||| || | |||| || ||| Sbjct 494 ATCCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAG 435 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| |||||||| ||| ||| |||| || || || ||| ||| Sbjct 434 ACGCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACC 375 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| ||||| ||||||| | ||||| || | || || || Sbjct 374 GAGCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAG 315 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCT 16705 || || | | || || || || ||||| |||||| Sbjct 314 GGACGCACCCTCTACGGCTTCGGCGGTTAAACTCTTCT 277 >SEQ30614 Length=1348 Score = 80.6 bits (88), Expect = 4e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1205 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1264 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 1265 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1324 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | || | ||| ||||||| Sbjct 1325 GCGCGGCGTGCTCAAGGTCTTCCT 1348 >SEQ21147 Length=4022 Score = 80.6 bits (88), Expect = 4e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 144 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 85 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 84 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 25 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 || | || | ||| ||||||| Sbjct 24 GCGCGGCGTGCTCAAGGTCTTCCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79036461726717