Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1099 93.3 1e-13 >seq1099 Length=64186 Score = 93.3 bits (102), Expect = 1e-13 Identities = 180/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 363997 TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTAT 364056 ||| | ||| | |||||| |||| || || || || | || | ||||| ||||| | | Sbjct 43805 TGGACGCTCATGTGCCCAAACGAGTGCCCGGGACTCACAGAAGCCTGGGGAGACGAATTT 43746 Query 364057 GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG 364116 || || ||||| | || ||| || || | || | || || |||||||| || Sbjct 43745 AAAGCGCTGTACGAGACATACGAAAAAGAAGGGAGGGGCAGGAAAACTATTCCCGCCCAA 43686 Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTAC 364176 | | ||||| ||||| | | | ||||| |||||||| || || || ||||||||| Sbjct 43685 CACTTGTGGTTCGCCATTTTACAAGCTCAGATCGAGACAGGGACGCCGTACATGTTGTAC 43626 Query 364177 AAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAAC 364236 || ||| | ||||| | || |||||| || |||| || || ||| | ||||| Sbjct 43625 AAGGATGCCTGCAATAGAAAAAGCAACCAAAAGAACCTGGGCACCATTAAAGGTAGCAAT 43566 Query 364237 CTATGTACCGAGATTATTGAATACAC 364262 ||||||| || ||| | || || || Sbjct 43565 TTATGTACAGAAATTGTGGAGTATAC 43540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302646070832558