Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6222 104 2e-17 seq1 104 2e-17 seq1287 93.3 4e-14 >seq6222 Length=16261 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || ||| | || |||||| | Sbjct 336 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCT 395 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||| ||| | || || ||||| |||||||||||||| ||||||||| Sbjct 396 AGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGAT 455 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | || |||||||| || ||||| | | | | | || || Sbjct 456 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 515 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || |||||||| || Sbjct 516 AACATCCAGAAAGAATCCAC 535 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | || || | || |||||| ||| Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || || || |||||||||||||| ||||| ||||| Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 914 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | ||| || ||| Sbjct 915 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 974 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 975 ATCCAGAAAGAATCCAC 991 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | ||||| ||| ||| Sbjct 1023 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTTGAAGTTGAGCCCAGT 1082 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 1083 GACACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 1142 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 1143 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 1179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || |||| |||||| ||| Sbjct 567 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTCGAGCCCAGT 626 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| |||||||||||||| ||||||||||| Sbjct 627 GACACCATTGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 686 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | |||||||| || ||||| Sbjct 687 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 721 >seq1 Length=14292544 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || || ||| ||| Sbjct 9556179 ATGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGT 9556120 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 9556119 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 9556060 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||||| || |||||||| || ||||||| Sbjct 9556059 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATG 9556023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| | || |||||| | Sbjct 9556639 CAACATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCC 9556580 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | ||||| ||||| ||||| |||||||| || ||||| Sbjct 9556579 CAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCCGA 9556520 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||||| ||||| | | |||||||| || ||||||| Sbjct 9556519 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 9556479 >seq1287 Length=55868 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || ||||| || || | ||||| | || || ||| ||| Sbjct 31145 AATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAG-CCAT 31087 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || || || || | || || || ||| || || |||||||| ||||| || | Sbjct 31086 CTGATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACC 31027 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 ||||| || |||||| | || || |||||||| || | |||| | ||| |||| Sbjct 31026 AACAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATA 30967 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||||| ||||| || | ||||| ||||| ||| Sbjct 30966 ACATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGA 30929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429713993007195