Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq45 114 2e-20 seq3126 105 8e-18 seq214 96.9 4e-15 >seq45 Length=4641476 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 476398 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 476457 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 476458 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 476517 Query 32803 CAATAAGTCTCTCTCC 32818 | | | |||||| || Sbjct 476518 CGACCACTCTCTCACC 476533 >seq3126 Length=28506 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| ||| | || | Sbjct 15061 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 15002 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 15001 TCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAATG 14942 Query 32803 C 32803 | Sbjct 14941 C 14941 >seq214 Length=1293776 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 84167 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 84108 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | |||||| || ||||||||||| ||||| |||||||| ||||| || | || || | Sbjct 84107 TGAGAGATTGGCTCTGATCGATGAACGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 84048 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA 62064 | || | || ||||| | || ||||| Sbjct 84047 TCTGGGAGATCTCCCACACCGTCTTATA 84020 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 |||| ||||||||||||||||||||||| ||||| | || || ||||||| | || Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCCAGAAACTCAAAGATGTCCAGGTGCCACGG 77977 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCC 63218 |||| ||| ||||| | | | ||||||| Sbjct 77976 CTCCAGGTAGATGGCAAAAGCCCCAGGCC 77948 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || || || |||||||||| |||||| || ||||| || || || || ||||||||| Sbjct 80863 TACGTTTCATACGGTCCTTCCTGCTCAGCAAGCTCACAGCTAGCTTCCAAAGCACCGTAA 80804 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || ||||| || || |||| || || || || || || |||| || || ||||| Sbjct 80803 TAGATGGTCTCAAATATCTGCTGGTTCAGGAGCTGGGCCTCGGGGCTTTCGAAGGGATAC 80744 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 | | ||| || || ||||| || | || || || || || ||||| || Sbjct 80743 CTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 80694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633296420572400