Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3126 82.4 8e-11 seq647 82.4 8e-11 >seq3126 Length=28506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 |||| |||||| ||||| || ||||| |||||| |||||||| || || |||||||| Sbjct 15011 CCTCTTTTCTTCAGCCAGAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACT 14952 Query 93224 GCTGCAAATGCCACAATACGTTC 93246 ||||||||||| || | |||||| Sbjct 14951 GCTGCAAATGCTACCACACGTTC 14929 >seq647 Length=124777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||||||||| || | ||| ||||||||||| ||||| |||||||| | |||||| Sbjct 6404 TACATTTCAGAGTGAATATTTTCCATTGCAATCTGGAAGCCGTAGAAGGCACGAGCTTCG 6345 Query 93446 GTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTC 93486 | |||||||| || | || |||| ||||| |||||||||| Sbjct 6344 GGAATCTGCACCTCGCTCAG-AAATTTCTCTGCGAGATTTTC 6304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556565879559560