Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6222 118 9e-22 seq1099 111 1e-19 seq1287 109 5e-19 seq715 104 2e-17 seq479 100 2e-16 >seq6222 Length=16261 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| || || || || || |||||||||| || || ||| Sbjct 795 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACAATCACTCTTGAGGTCGAGCCCAGT 854 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| |||||||| || || ||||| || ||||| Sbjct 855 GACACCATAGAGAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAG 914 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 915 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 974 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 975 ATCCAGAAAGAATCCACC 992 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| || ||||| || || | || || || || |||| ||||| || || Sbjct 334 TAAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 393 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | ||| ||| | || || | || || || |||||||| || || ||||| |||| Sbjct 394 CTAGCGACACCATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCG 453 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| || | || || || || ||||| ||| | || || |||||| | || || | Sbjct 454 ATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACT 513 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||| || |||||||||||| | || | || |||| || | ||||| Sbjct 514 ACAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGTCTGAGGGGAGG 565 >seq1099 Length=64186 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCAC 129759 || ||||| ||||| || || ||||| ||| | ||||| |||||||| | || Sbjct 43504 GACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACAT 43563 Query 129760 AAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCT 129819 ||||| ||| |||||||||||||| | |||||| || ||||| | ||||| ||||| Sbjct 43564 AAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATCC 43623 Query 129820 TTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 ||||||| |||||||||||| || || |||| || | || | ||||| Sbjct 43624 TTGTACAACATGTACGGCGTCCCTGTCTCGATCTGAGCTTGTAAAATGG 43672 >seq1287 Length=55868 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||||||||| || || | ||||| || || || | | Sbjct 31144 ATGCAAATTTTCGTGAAGACTTTAACCGGCAAGACTATTACTCTGGAGGTAGAGCCATCT 31085 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || || || || || ||| Sbjct 31084 GATACGATAGAAAATGTGAAGGCGAAAATTCAAGATAAGGAAGGCATCCCTCCTGACCAA 31025 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || ||||| | ||||| | || | ||||| || ||| Sbjct 31024 CAGCGATTGATTTTTGCGGGAAAACAACTCGAGGACGGAAGAACGCTATCCGACTATAAC 30965 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | ||||| || ||| || | || || ||| Sbjct 30964 ATTCAAAAGGAATCAACTCTCCATTTGGTGTTGAGACTACGTGGTGGT 30917 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || ||||| |||| || ||||| ||| | | Sbjct 31372 ATGCAAATTTTCGTGAAGACGTTGACAGGGAAAACCATCACGCTAGAAGTAGAACCATCA 31313 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||| || || ||||| ||||| ||||| || || ||| Sbjct 31312 GACTCCATAGAGAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAA 31253 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || |||||| | ||||| | || | || || |||||| Sbjct 31252 CAGCGTTTGATTTTTGCAGGAAAACAGCTCGAGGACGGAAGAACGCTATCGGACTACAAC 31193 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || | |||||||| ||||| Sbjct 31192 ATTCAGAAGGAGTCGACGCTCCACCTTGTACTTCGATTGCGGGGAGG 31146 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||| || || || ||| | || | || |||||| | | Sbjct 31600 ATGCAAATTTTCGTGAAGACTTTGACAGGGAAGACGATAACGTTGGAGGTGGAACCGTCA 31541 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| |||||||| || ||||| || || || Sbjct 31540 GACACGATCGAGAATGTGAAGGCGAAAATTCAGGACAAGGAAGGCATTCCGCCAGACCAG 31481 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || || || || ||| | || ||| | | || | || || ||||| Sbjct 31480 CAACGGCTTATTTTCGCGGGGAAGCAGCTGGAAGATGGCAGAACACTATCGGACTACAAT 31421 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| || | ||| | || |||| ||||| ||||| Sbjct 31420 ATTCAGAAGGAATCAACTTTGCATCTGGTGCTGCGGTTGCGTGGAGG 31374 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| ||||||| || || |||| || || ||||| | Sbjct 31832 AAAAATGCAGATCTTCGTGAAAACGCTAACCGGGAAGACTATCACGCTGGAGGTGGAGCC 31773 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || | | || |||||||| ||||| ||||| || || || || Sbjct 31772 GTCGGACACGATTGAGAACGTGAAGGCGAAAATTCAGGACAAAGAGGGAATCCCCCCTGA 31713 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || || | ||||| || || || ||| | || ||| | | || | || || || Sbjct 31712 TCAGCAGCGCTTGATATTCGCGGGGAAGCAGCTGGAAGATGGCAGAACGCTATCGGACTA 31653 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||||||| || ||||| ||| | || || ||| Sbjct 31652 CAACATTCAGAAGGAATCTACCCTTCACTTGGTT 31619 >seq715 Length=106915 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 129709 TTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTA 129768 ||||| ||||| |||| |||| | | ||||||| | || | |||||| || | | Sbjct 92517 TTGCATACGGCCACCTCGTCTTTGCTAGTAAACTCGACCACCTCAGTGCACAAGTTGCCA 92576 Query 129769 TTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATC 129828 || || || ||||||| ||||||||| || ||| | |||||||| |||||||||||| Sbjct 92577 CACTTTATCGTCCCCAAATTCTTTTGATTGCTCTTCTTATTGCAAGCGTCTTTGTACATC 92636 Query 129829 ATGTACGGCGTGCCCGTTTC 129848 |||||||| ||||| ||||| Sbjct 92637 ATGTACGGAGTGCCTGTTTC 92656 >seq479 Length=216575 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| |||||||| ||| | | Sbjct 29833 GATGCAGATCTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTTGAAGTTGAATCTTC 29774 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || |||||||||||||||||||| ||||| ||||| || Sbjct 29773 CGACACGATCGAAAATGTAAAGGCCAAAATTCAAGACAAGGAGGGAATTCCTCCCGACCA 29714 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | ||||| || || || || || | || || | | || |||| || ||||| Sbjct 29713 ACAGAGGCTTATTTTCGCAGGGAAGCAACTGGAAGACGGCAGGACTCTCTCTGACTACAA 29654 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| || || ||||| ||| | ||| Sbjct 29653 CATCCAGAAGGAATCTACCCTTCAT 29629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419511264134485