Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4642 95.1 2e-14 SEQ21632 91.5 3e-13 seq1123 91.5 3e-13 seq180 91.5 3e-13 seq1741 89.7 1e-12 SEQ19459 87.8 4e-12 SEQ22653 86.0 1e-11 seq46 86.0 1e-11 seq23 86.0 1e-11 >seq4642 Length=20754 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 5706 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 5765 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 5766 TCCCGGCAGAGA 5777 >SEQ21632 Length=3948 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 290 AGCCCGGATAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 231 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 230 CCCCACGTTGGGC 218 >seq1123 Length=62945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 62785 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 62726 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 62725 CCCCACGTTGGGC 62713 >seq180 Length=1662890 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1434137 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1434196 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1434197 CCCCACGTTGGGC 1434209 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1453237 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1453296 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1453297 CCCCACGTTGGGC 1453309 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1456134 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1456193 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1456194 CCCCACGTTGGGC 1456206 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1457298 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1457357 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1457358 CCCCACGTTGGGC 1457370 >seq1741 Length=44818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC-CAGCGTGGTG 218586 |||| ||||| ||||| ||||| || || || ||| | || || || |||| || | Sbjct 17666 ACAAAGAGCTGATTCTCTTCTCTCGCTACGACACGGAAAGGTCGATACCGCAGC-TGATC 17608 Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC-GCATTCAAGCGGAACCTGGT 218645 || ||| ||||| ||||| ||| | ||||| || |||| |||| |||| || Sbjct 17607 GACGGCTGGAAGCCCGGCCAGCGCAAGGTGCTCTTCGCATGCAT-CAAGAAGAACATGAA 17549 Query 218646 TCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCA 218705 || ||||| || ||||| ||| || | || || || |||||| | | ||||||||| Sbjct 17548 GCAGGAAATCAAAGTCGCACAGCTTGCGGGCTACGTCTCCGAAGTCAGCGCCTACCATCA 17489 Query 218706 CGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 ||| ||| ||||| ||| ||||||| ||||| ||| || || ||||| || Sbjct 17488 CGGAGAGGCCAGTCTCCAGCAGACCATTGTCTCGATGGCGCAGCGCTTCGTCGGCAGCAA 17429 Query 218766 CAACATGAACTTGCT 218780 ||| | ||||| || Sbjct 17428 CAATCTTAACTTCCT 17414 >SEQ19459 Length=4357 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| || |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 973 GCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1032 Query 142564 CCCACATCGGGCA 142576 ||||| | ||||| Sbjct 1033 CCCACGTTGGGCA 1045 >SEQ22653 Length=3818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||| Sbjct 277 GCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 218 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 217 CCCACGTTGGGC 206 >seq46 Length=4621599 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||| Sbjct 2565219 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTTGAGC 2565160 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2565159 CCCACGTTGGGC 2565148 >seq23 Length=5954011 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| || ||||||| ||||||||||||| |||||||||||||||| Sbjct 106024 GCCCGGCTAGCTCATTCAGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 106083 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 106084 CCCACATTGGGC 106095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027278835902329