Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq214 114 2e-20 seq3126 87.8 3e-12 seq45 84.2 4e-11 >seq214 Length=1293776 Score = 114 bits (126), Expect = 2e-20 Identities = 159/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 244321 CCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT 244379 ||||| ||||||| || |||||||| || || || || || ||| || |||| Sbjct 80889 CCCCTCTGCTGACAGGAGAACCCTCGTACGTTTCATACGGTCCTTCCTGCTCAGCAAGCT 80830 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 |||||| | || | || |||| ||||||||||| || ||| || ||||| | Sbjct 80829 CACAGCTAGCTTCCAAAGCACCGTAATAGATGGTCTCAAATATCTGCTGGTTCAGGAGCT 80770 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGC 244498 |||||| | || |||||| || || ||| | |||||| |||| ||||| |||||| Sbjct 80769 GGGCCTCGGGGCTTTCGAAGGG-ATACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGC 80711 Query 244499 ACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||||||||||||||||| | ||| || ||||||||||| Sbjct 80710 ACGCCGATGCCGATGGGGCGGTGCCGTCTGTTGGAGCGC 80672 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||| ||||| || || |||||||| || ||| ||||| |||| | |||| Sbjct 78095 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 78036 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| | | |||| ||| ||||||| ||| | |||||| ||| Sbjct 78035 TCCTCCTTCCCAGTGTTCTTCTTTAAGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGC 77976 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||||| || | || || |||| || Sbjct 77975 TCCAGGTAGATGGCAAAAGCCCCAGGCCTCT 77945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | ||| ||||| ||| ||| || ||||||||| Sbjct 82151 ACCTGAAACTCTCCCGAAAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATG 82092 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| ||||| |||||||| || | || || Sbjct 82091 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGG 82032 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| || || || | ||| Sbjct 82031 CTGTTTCTGACACCATACCT 82012 >seq3126 Length=28506 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||| ||| | || || || ||||||||||| || ||| | || || || || |||| Sbjct 14936 TGGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCATCAATTTTCT 14995 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| | | | | ||||| |||||||| || || || ||||||||||| || | Sbjct 14996 GGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAG 15055 Query 42826 ACGAGG 42831 | |||| Sbjct 15056 ATGAGG 15061 >seq45 Length=4641476 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| | || || Sbjct 476533 GGTGAGAGAGTGGTCGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 476474 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 476473 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 476414 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 476413 ATTAGCAGAGATGAGG 476398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943839066155440