Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1287 145 2e-29 seq479 127 5e-24 seq6222 125 2e-23 >seq1287 Length=55868 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || | || |||||| || || | ||| || || || || || ||||| | Sbjct 31145 TCCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGA 31204 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||||| | |||||| || | ||||||||||| || |||| ||||||||| ||| Sbjct 31205 TAGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTG---GTCTGG 31261 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| ||||| |||||||| || |||||||| || ||||| || || | ||| Sbjct 31262 AGGAATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTC 31321 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||| |||||||| || ||||| |||| ||||| ||||| || |||||| Sbjct 31322 TACTTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | ||||| | || ||||| | || || || ||||| Sbjct 31637 TTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAA 31696 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||||| ||| | |||||||| ||||| ||||| |||||||| |||||||| Sbjct 31697 TATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTCGCCTTCACGTT 31756 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || || |||||||| ||||||||||| || || || || Sbjct 31757 CTCAATCGTGTCCGACGGCTCCACCTCCAGCGTGATAGTCTTCCCGGTTAGCGTTTTCAC 31816 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 31817 GAAGATCTGCATT 31829 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||| | || || | || ||||| | || || || ||||| Sbjct 31409 TTCCTTCTGAATATTGTAGTCCGATAGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAA 31468 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || || || || ||||| || ||||| || ||||| |||||||| ||||| Sbjct 31469 AATAAGCCGTTGCTGG---TCTGGCGGAATGCCTTCCTTGTCCTGAATTTTCGCCTTCAC 31525 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || ||| || || | ||| ||||||||||| |||| |||||| Sbjct 31526 ATTCTCGATCGTGTCTGACGGTTCCACCTCCAACGTTATCGTCTTCCCTGTCAAAGTCTT 31585 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 31586 CACGAAAATTTGCAT 31600 >seq479 Length=216575 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| ||||||| || ||| || ||||| || ||||| | ||| || | |||||||| Sbjct 29623 TACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTC 29682 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 | ||| || |||||||| || || | |||||| || ||||| || || || || Sbjct 29683 CAGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTG 29742 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 ||||| || || || ||||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 29743 AATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTT 29802 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||||||||| |||||||| Sbjct 29803 CCCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq6222 Length=16261 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| |||||||| | || || || ||||| Sbjct 530 TTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 471 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| ||| || || |||||||| || ||||| || || ||||| || Sbjct 470 GATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATT 411 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| | ||||| | || || || || ||||| ||||| || ||||| ||||| || Sbjct 410 CTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 351 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 350 AAAGATCTGCAT 339 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| |||||||| | || || || || ||| Sbjct 757 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 698 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| || || |||||||| || ||||| || || || |||||| Sbjct 697 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTT 638 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||||||||| ||||| || ||||| ||||| || Sbjct 637 TCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTCACA 578 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 577 AAGATCTGCAT 567 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| |||||||| || ||||| | || || || || ||| Sbjct 1213 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 1154 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| || || |||||||| || ||||| || || ||||||||| Sbjct 1153 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTT 1094 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| || || || Sbjct 1093 TCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACA 1034 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1033 AAGATCTGCAT 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179014021291182