Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1099 140 4e-28 seq45 82.4 9e-11 >seq1099 Length=64186 Score = 140 bits (154), Expect = 4e-28 Identities = 397/605 (66%), Gaps = 4/605 (1%) Strand=Plus/Plus Query 114176 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 |||| ||| |||| ||||| ||||| |||| || || || ||||| ||| Sbjct 43204 GCCAGCTCGCAGCTGGCCTCAAGGGCAGCGTAGTAAATGCATTCGAAAATATTCCTGTTC 43263 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAG 114294 | | | |||| ||| || ||||| | || | ||| || || || |||| || || Sbjct 43264 AATCTCCTGGCTTCGGCGCTGTCAAAGG-GATACCGCAGCATCATGAACGCATCAGCAAG 43322 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 114354 || || ||||| ||||| || ||||| || ||||| || ||| || || | || Sbjct 43323 GCCCTGAACACCCAGGCCGATAGGGCGGTGCCTCATGTTGCTCTTGCGCGCTTCTTGGAC 43382 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 |||||| | ||||| |||||||| | || | || || | || || || | Sbjct 43383 AGGATAATAGTTCCTGTCGATAACGCAGTTCAAGTTGCGCGTCGCGACTTTGACGACAGC 43442 Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 | | || ||||| | ||| | || || || ||| |||||||||||| | Sbjct 43443 TTTTAATTTGTCGTAGTTGAAAGTTTTCGTTTCGCGATCAACAAACTTAGGAAGGGAAAG 43502 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 ||||||| || ||||||| | || ||||| || ||||| | |||||| ||||| Sbjct 43503 GGACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACA 43562 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594 ||||| || ||||||||||||| ||||||||| || ||| | || || ||||| Sbjct 43563 TAAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATC 43622 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG-AGAATAGCCTTCCAGA 114653 |||||| | |||||| |||||||| ||||| | || | |||| | ||| || ||| | Sbjct 43623 CTTGTACAACATGTACGGCGTCCCTGTCTCGATCTGAG-CTTGTAAAATGGCGAACCACA 43681 Query 114654 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 114713 | ||| || | ||| || | | ||| || | ||||| | ||| || | Sbjct 43682 AGTGTTGGGCGGGAATAGTTTTCCTGCCCCTCCCTTCTTTTTCGTATGTCTCGTACAGCG 43741 Query 114714 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 114773 ||| ||| || || ||| ||| |||| ||| || || || | |||||| | ||| | Sbjct 43742 CTTTAAATTCGTCTCCCCAGGCTTCTGTGAGTCCCGGGCACTCGTTTGGGCACATGAGCG 43801 Query 114774 ACCAT 114778 |||| Sbjct 43802 TCCAT 43806 >seq45 Length=4641476 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 126080 ATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 126139 || |||||||| ||||| || ||| ||||| || |||| |||||||| ||| || || Sbjct 476412 ATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTCAGCCAAAATATA 476471 Query 126140 GCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||||||||| |||||||| || || || Sbjct 476472 GCAGCAAATGAACCCGAAAAGAAGATGCCTTCAAC 476506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597037234066520