Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colinus_20virginianus_20[genbank_20GCA_5F000599465.2_202017-07-13] 42,369 sequences; 1,254,146,751 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6222 149 6e-31 seq1287 122 9e-23 seq1 116 4e-21 seq479 107 2e-18 seq1099 93.3 4e-14 >seq6222 Length=16261 Score = 149 bits (164), Expect = 6e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | |||||| | ||| Sbjct 1006 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 947 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| || |||||||| |||||||| ||| Sbjct 946 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCT 887 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| || || || || | ||| | ||| Sbjct 886 TGGATTTTGGCCTTCACATTCTCTATGGTGTCACTGGGCTCGACCTCAAGAGTGATTGTC 827 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| ||||| ||||| || ||||| Sbjct 826 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 795 Score = 132 bits (146), Expect = 5e-26 Identities = 161/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | ||||||| ||||| Sbjct 550 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 491 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| ||||||||||| |||||||| ||| Sbjct 490 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 431 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | | || || || | || | |||| Sbjct 430 TGGATCTTGGCCTTCACATTCTCTATGGTGTCGCTAGGCTCGACCTCAAGGGTGATGGTC 371 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAA 64448 ||||| |||| || || || || || ||||| ||||| Sbjct 370 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTAA 333 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||||| ||||| Sbjct 778 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 719 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||||||||| |||||||| ||| Sbjct 718 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 659 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| || | || |||| || || || || | || | |||| Sbjct 658 TGGATCTTGGCCTTTACGTTTTCAATGGTGTCACTGGGCTCGACCTCGAGCGTGATGGTC 599 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 598 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 567 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||| | ||| Sbjct 1234 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGACCATCT 1175 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||||||||| |||||||| ||| Sbjct 1174 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 1115 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || |||| || || ||||| | || | |||| Sbjct 1114 TGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACTTCAAGGGTGATGGTC 1055 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||||| || || || ||||| Sbjct 1054 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1023 >seq1287 Length=55868 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||||| ||| || || || | |||||| || || ||||||||||| || | Sbjct 31146 CCTCCCCGCAATCGAAGTACAAGGTGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAT 31205 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | |||| || ||||| || || ||| |||| | ||||| ||||| |||||| Sbjct 31206 AGCGTTCTTCCGTCCTCGAGCTGTTTTCCTGCAAAAATCAAACGCTGTTGGTCTGGAGGA 31265 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| ||||| || || | | |||||||| ||| ||| | | || | || || Sbjct 31266 ATTCCCTCTTTGTCCTGGA-TCTTTGCTTTCACATTCTCTATGGAGTCTGATGGTTCTAC 31324 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||| || || ||||| || || ||||||||||||||| Sbjct 31325 TTCTAGCGTGATGGTTTTCCCTGTCAACGTCTTCACGAAAATTTGCATT 31373 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| ||||| | || ||||| || ||||| ||||| || | Sbjct 31374 CCTCCACGCAACCGCAGCACCAGATGCAAAGTTGATTCCTTCTGAATATTGTAGTCCGAT 31433 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| |||||||| || || |||| ||||| |||||||| || ||| Sbjct 31434 AGTGTTCTGCCATCTTCCAGCTGCTTCCCCGCGAAAATAAGCCGTTGCTGGTCTGGCGGA 31493 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || ||||| ||| ||| ||| | || || | ||||| Sbjct 31494 ATGCCTTCCTTGTCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCTGACGGTTCCACC 31553 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| ||||| || |||||||| || |||||||||||||| Sbjct 31554 TCCAACGTTATCGTCTTCCCTGTCAAAGTCTTCACGAAAATTTGCAT 31600 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| | ||| | || ||||| ||||||||||| || || | Sbjct 30917 ACCACCACGTAGTCTCAACACCAAATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGA 30976 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | |||| || || || || || ||| |||| | ||||| ||||| ||||| Sbjct 30977 TAGCGTTCTTCCGTCCTCGAGTTGTTTTCCCGCAAAAATCAATCGCTGTTGGTCAGGAGG 31036 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| ||||| ||| ||| || | |||||| | || || Sbjct 31037 GATGCCTTCCTTATCTTGAATTTTCGCCTTCACATTTTCTATCGTATCAGATGGCTCTAC 31096 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||||||||||| ||||| || ||||||||||||||| Sbjct 31097 CTCCAGAGTAATAGTCTTGCCGGTTAAAGTCTTCACGAAAATTTGCATT 31145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || ||||||||||| || | | || | | ||||| |||||| Sbjct 31626 TGAAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGCGTTCTGCCATCTTCCAGCTGC 31685 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | || | |||||||| || || || ||||| ||||| || || ||||| Sbjct 31686 TTCCCCGCGAATATCAAGCGCTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTC 31745 Query 64361 TGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || ||| | || | | |||| ||||| || | || | ||||| ||||| Sbjct 31746 GCCTTCACGTTCTCAATCGTGTCCGACGGC-TCCACCTCCAGCGTGATAGTCTTCCCGGT 31804 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||||| ||||| || |||||||| Sbjct 31805 TAGCGTTTTCACGAAGATCTGCATTTT 31831 >seq1 Length=14292544 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||||| | ||| Sbjct 9556196 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 9556255 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| |||| |||| |||||| || || || || ||||| || || Sbjct 9556256 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCC 9556315 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | ||| | |||| Sbjct 9556316 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGAGTGATGGTC 9556375 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || ||||| || ||||| Sbjct 9556376 TTACCTGTCAAGGTCTTCACGAAGATCTGCAT 9556407 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | ||||||| | ||| Sbjct 9555968 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 9556027 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || |||| |||| |||||| |||||||| || ||||| || || Sbjct 9556028 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGGATGCCTTCCTTGTCC 9556087 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 9556088 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 9556147 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| || ||||| Sbjct 9556148 TTACCAGTGAGGGTCTTCACGAAGATCTGCAT 9556179 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | |||||| | ||| Sbjct 9556424 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 9556483 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| || || ||||| || || Sbjct 9556484 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGGATGCCTTCCTTGTCC 9556543 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || || || || | || | |||| Sbjct 9556544 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAAGGTGATGGTC 9556603 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | || || ||||| || ||||| || Sbjct 9556604 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATGTT 9556638 >seq479 Length=216575 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || ||||| || || |||||||| || | || || | ||||||| Sbjct 29624 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGAGTCCTGCCGTCTTCC 29683 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || || |||| |||| ||| ||||||||||||||||| || || ||||| Sbjct 29684 AGTTGCTTCCCTGCGAAAATAAGCCTCTGTTGGTCGGGAGGAATTCCCTCCTTGTCTTGA 29743 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||||||| || | || || | || ||||| | || | |||||| Sbjct 29744 ATTTTGGCCTTTACATTTTCGATCGTGTCGGAAGATTCAACTTCAAGGGTGATGGTCTTC 29803 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || ||||| || ||||| Sbjct 29804 CCTGTGAGGGTCTTGACGAAGATCTGCAT 29832 >seq1099 Length=64186 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 |||||||||||||| || || | ||| || || | || | ||||||||||| || Sbjct 43504 GACGCCAAGTTGCACACAGCGACTTCGTCCTTGCTCGTATACTCCACAATTTCTGTACAT 43563 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 ||||| || | | ||||||||||||||| || || || ||| | ||||| || || Sbjct 43564 AAATTGCTACCTTTAATGGTGCCCAGGTTCTTTTGGTTGCTTTTTCTATTGCAGGCATCC 43623 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||||||| |||||||| || || || || Sbjct 43624 TTGTACAACATGTACGGCGTCCCTGTCTC 43652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499380181868360